Streptococcus parasanguinis ATCC 15912: HMPREF0833_10166
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Entry
HMPREF0833_10166 CDS
T01545
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
scp
Streptococcus parasanguinis ATCC 15912
Pathway
scp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0833_10166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scp03019
]
HMPREF0833_10166
03009 Ribosome biogenesis [BR:
scp03009
]
HMPREF0833_10166
Enzymes [BR:
scp01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
HMPREF0833_10166
Messenger RNA biogenesis [BR:
scp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF0833_10166
Ribosome biogenesis [BR:
scp03009
]
Prokaryotic type
rRNA helicases
HMPREF0833_10166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEH55197
UniProt:
F8DFC2
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All DBs
Position
163381..164952
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AA seq
523 aa
AA seq
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MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLF
SATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPE
LAIIFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNVDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQIIENLTKK
RMKGMKPATAEEAFQAKKQVALKKIERDFEDEKIRTNFEKFGKDARKLAAEFTPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSGGGFGGKGKGSRGNGRRGDQRRDRNRRDDREG
GRRDFKRKSNKNSRDFEGKGNKRPHRTSNEKKNGFVIRNKGDK
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattcaatgaatttaacttatctgctgaattattagcagaaatcgaaaaagctggc
tttgtagaagcaagccccatccaagaacaaaccattcctttggctcttgaaggaaaagat
gtcatcggccaagcgcaaacagggaccggtaaaacggctgcttttggtcttccaactttg
gagaagattgatgtcgataacacagtgattcaagctcttgttattgccccaacgcgtgaa
ttggcggttcaaagtcaggaagaactcttccgctttggacgtagtaagggtgtcaaagtt
cgctctgtctatggtggatcgagcattgaaaagcaaattaaagctttgaagtcaggtgct
cacatcgttgtgggaacacctggacgcttgctagatttgatcaagcgcaaggccttgaaa
cttaatcatattgaaacattgatcttggatgaagcagatgaaatgctcaatatgggcttc
ttggaagatatcgaagctatcattagccgtgttcccgaaacacgccaaaccttgctcttt
tcagcaacgatgccagaagccatcaaacgcatcggtgttcagtttatgaaagagccagaa
cacgttaagattgcggccaaagaattgacaactgatttggttgatcaatactatattcgt
gtcaaagagggcgaaaagtttgataccatgactcgattgatggacgtcgagcagcctgaa
cttgctatcatttttggtcggaccaaacgtcgggtcgatgagttgacgcgtggcttgaag
attcgtggtttccgggcagaagggattcacggagatttggatcaaaacaaacgtctccga
gtacttcgtgactttaaaaatgggaacgtggacgtcttggttgcaacagacgttgcggcg
cgtggtttggatatttcaggtgtgactcatgtctacaactacgatattccacaagatcca
gagagctatgttcaccggatcggacgaacaggtcgtgctgggaaaacagggcaatccatt
accttcgtttcgccaaatgaaatgggctatttgcaaatcattgagaacttgaccaaaaag
cggatgaagggaatgaaacctgcaacagcagaagaagccttccaagcgaaaaaacaagta
gcgctgaagaaaattgagcgagactttgaggatgaaaaaatccggactaactttgagaag
tttggtaaagatgctcgcaaattggctgcagaattcactcctgaagaactggctatgtat
atcttgagcttgaccgttcaagatccagacagtcttccagaagttgaaattgcgcgtgaa
aaaccattgccatttaaaccatccggtggtggctttggtgggaaaggaaaaggcagccgt
gggaatggccgtcgtggagaccaacgccgtgaccgaaatcgcagagatgaccgtgaaggt
ggacgccgtgatttcaaacgcaagtccaataaaaatagccgagactttgaaggtaaaggc
aataaacgtcctcatcgtacttctaatgaaaagaaaaatggatttgtcatccgcaacaaa
ggggataaataa
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