KEGG   Streptomyces sp. CdTB01: AS200_17150Help
Entry
AS200_17150       CDS       T04240                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
scx  Streptomyces sp. CdTB01
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:scx00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AS200_17150
Enzymes [BR:scx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AS200_17150
DNA repair and recombination proteins [BR:scx03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AS200_17150
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
3893681..3894562
Genome map
AA seq 293 aa AA seqDB search
MTPITEVEGRRLALSNLEKVLYPRSGFTKAEVLHYYAGNAEVLLPHLRDRPVSFLRYPDG
PDGQVFFAKNVPPGTPDWVTTAEVPRSEGPARMVLVQDLASLMWAANLVTEFHTHQWLVQ
EPGVADRIVFDLDPGAPATVVDCCEVALWLRERLAADGIDTCVKTSGSKGLHLLAAVRPT
PSERVSDYAKQLAVEAERAMPRLALHRMTRSLRPGKVFVDWSQNAARKTTATPYTLRARP
EPTVSAPVTWTEIEECEAPGQLTFLAPDIAPRVQDYGDLLAPLLDRANAGSLP
NT seq 882 nt NT seq  +upstreamnt  +downstreamnt
atgacgcccatcacggaggtggaggggagacggctcgccctcagcaacctggagaaggtg
ctgtatccgcggtccgggttcaccaaggccgaggtgctgcactactacgcgggcaacgcc
gaggtgctgctcccccacctgcgggatcggcccgtctccttcctccgctaccccgacggg
ccggacgggcaggtcttcttcgccaagaacgttccgcccggtacgcccgactgggtcacc
accgccgaggtgccgcggtccgagggcccggcacgcatggtgctcgtgcaggatctggcg
tccctgatgtgggccgccaatctcgtcaccgagttccatacgcaccagtggctcgtccag
gagcccggcgtcgccgaccggatcgtcttcgacctggatcccggcgcgcccgccaccgtg
gtcgactgctgcgaggtggccctgtggctgcgcgagcggctggccgccgacgggatcgac
acctgcgtcaagacctccggctccaaggggctgcacctgctggccgccgtccggccgacg
ccctccgagcgggtcagcgactacgccaagcagctcgccgtcgaggccgagcgggccatg
ccccggctcgccctgcaccggatgacccgcagcctgcggccgggcaaggtcttcgtcgac
tggagccagaacgcggcacgcaagaccaccgccacgccctacaccctgcgcgcccgcccc
gagcccaccgtctccgcgccggtgacctggaccgagatcgaggagtgcgaggcgccgggg
cagctcaccttcctcgcgccggacatcgccccccgcgtccaggactacggcgacctgctg
gcgccgctcctcgaccgggcgaacgccggctcacttccctga

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