KEGG   Streptomyces sp. CdTB01: AS200_41235Help
Entry
AS200_41235       CDS       T04240                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
scx  Streptomyces sp. CdTB01
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:scx00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AS200_41235
Enzymes [BR:scx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AS200_41235
DNA repair and recombination proteins [BR:scx03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AS200_41235
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(9228324..9229337)
Genome map
AA seq 337 aa AA seqDB search
MTAGGSVDNSPVTLPLIPPMLATPGTLPPASQDARWAYETKQDGQRVVAYLEGNGRVRLR
ARSGEEITGAYPELRELGTALGATAAVLDGEVLALDEHGRADFQLLQSRMGLAHAPARAA
RQAAKVPAHLVLFDVMHLAGENLTALPYVRRRGLLEKLGLDGPFWSTPAALVGHGRQALS
ATREHGMEGLVCKRLDSVYEPGVRSRAWIKIRNMRSEDVVVGGWLAGKGRLSGLPGAVLV
GQRAAGRLRYVGGVGTGWSEAERVRLAGLLRDAGTTVCPFDPVPSVPGAHWVMPRLVGEV
RYSTRTRAGMLRQPSWLRLRPDLTPEEAAADFPADLL
NT seq 1014 nt NT seq  +upstreamnt  +downstreamnt
gtgaccgcgggcggcagtgtcgacaactcacccgtgaccctccccctgatcccgcccatg
ctcgcgacgccgggcacactgccgcccgcgtcgcaggacgcccgctgggcctacgagacc
aagcaggacggccagcgggtcgtggcctacctcgaagggaacggccgtgtgcggctgcgc
gcccggtcgggcgaggagatcaccggcgcgtacccggagcttcgggagctcggcacggcg
ctgggcgccacggccgcggtgctggacggggaggtgctggcgctggacgaacacggccgt
gccgacttccagttgctgcagtcccggatgggcctcgcacacgcgcccgcgcgggcggca
cgtcaggccgccaaggtccccgctcacctggtgctcttcgacgtgatgcacctggccggc
gagaatctcaccgctctaccctacgtccgccgccgggggcttctggagaagctggggctc
gacgggcccttctggtccacgcccgccgccctcgtcgggcacggccggcaggcgctgagc
gccacccgcgagcacggcatggagggcctggtctgcaagcggctggactcggtgtacgaa
cccggggtgcgctcccgcgcctggatcaagatccgcaacatgcgcagcgaggacgtcgtg
gtggggggctggctggcgggcaaggggcggctgtcggggctgcccggtgcggtcctggtg
ggacagcgggcggcggggcggctgcgctacgtcggcggggtgggcaccggctggagcgag
gccgagcgcgtccggctcgccgggctgctgcgggatgccgggaccaccgtgtgccccttc
gatcccgtcccctcggtgcccggcgcccactgggtgatgccccggctggtcggcgaggtc
cgctacagcacccggacccgcgccggcatgctgcgccagccctcctggctgcggctgcgc
ccggacctgacccccgaggaggcggcggccgacttcccggccgacctgctctga

DBGET integrated database retrieval system