Streptococcus dysgalactiae subsp. equisimilis RE378: GGS_0123
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Entry
GGS_0123 CDS
T02269
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sda
Streptococcus dysgalactiae subsp. equisimilis RE378
Pathway
sda03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sda00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GGS_0123 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sda03021
]
GGS_0123 (rpoC)
03400 DNA repair and recombination proteins [BR:
sda03400
]
GGS_0123 (rpoC)
Enzymes [BR:
sda01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GGS_0123 (rpoC)
Transcription machinery [BR:
sda03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GGS_0123 (rpoC)
DNA repair and recombination proteins [BR:
sda03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GGS_0123 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
FUSC
Motif
Other DBs
NCBI-ProteinID:
BAM60298
UniProt:
A0A9W3ZM44
LinkDB
All DBs
Position
109778..113419
Genome browser
AA seq
1213 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPMDTPLEPKSLLTEREYREKLQEYGHGSFIAKMGAEAIQDLL
KRVDLAAEIAELKEELKSASGQKRIKAVRRLDVLDAFHKSGNKPEWMVMNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVAKEYAGNVKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEDAGREGEGMIFKDKDEAVMAYRNGYAHLHSRVGI
AVDSMPNKPWKDSQRHKIMVTTVGKILFNDIMPEDLPYLQEPNNANLTEGTPDKYFLEPG
QDIQEVIDGLDINVPFKKKNLGNIIAETFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKAEIIDAAHHRVEEINKAFRRGLMTDDDRYVAVTTTWREAKEALEKRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRAITDGKEVTETL
EERLQGRYTRKSVKHPETGEVLIGADQLITEDMARKIVDAGVEEVTIRSVFTCATRHGVC
RHCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVVPFTARMKVEVGDE
VNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRVMDPGDTDLLPGTLMDISDFTDANKDIVISGGIPATSRPVLMGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNIEPQAINDVEVIDKP
EVSEETVAATETE
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgttttaaaagtatgcaaatcacattagcctcaccaagtaaggtc
cgttcatggtcttatggtgaagttaaaaaacctgaaacaatcaactaccgtacactgaaa
ccagaacgtgaaggactctttgacgaagtcatctttggtccaacaaaagactgggaatgt
gcgtgtgggaaatacaaacgtatccgttataaaggaatcgtgtgtgaccgctgtggggtt
gaggtaactcgtgccaaagtacgtcgtgaacgtatggggcatatcgagttaaaagctcct
gtatcacacatctggtacttcaaagggattccatcacgtatgggattgactcttgacatg
agccctcgtgcccttgaagaagttatttattttgcggcttatgtggtcattgacccaatg
gatactccgcttgaaccaaaatcattattaacagaacgcgaataccgtgaaaaacttcag
gagtatggacacggatcattcattgctaagatgggtgctgaagccattcaagatctcttg
aaacgtgttgatttggcagctgaaatcgctgaattaaaagaagaattgaaatctgcttct
ggtcaaaaacggattaaggcagttcgtcgtttggacgtgcttgatgccttccacaaatct
ggaaataaaccagaatggatggttatgaacatcttgccagttattccgccagatcttcgt
ccgatggttcaattggatggtggccgttttgcggcatcagatttgaatgacttgtaccgt
cgtgtcattaaccgtaacaaccgtttggcacgtttgttagaacttaatgccccaggtatt
attgttcaaaatgaaaagcggatgcttcaagaggcggtagatgcgctgattgataacggt
cgtcgtggtcgtccaattactggaccaggtagtcgtccattgaaatcattgagccacatg
cttaaaggtaaacaagggcgttttcgtcaaaacttacttggtaaacgtgtagacttctct
ggacgttccgttatcgctgttggtccgacccttaaaatgtaccaatgtggtgtcccacgt
gaaatggctatcgaactctttaaaccatttgtaatgcgcgagattgttgccaaagaatat
gctggtaacgttaaagccgctaaacgtatggttgaacgtggagacgaacgcatctgggat
atcttagaagaagttatcaaagaacacccagttcttcttaaccgtgcaccgaccctccac
agacttggtattcaagcttttgaacccgttctgattgacggtaaggcacttcgtcttcac
ccacttgtgtgtgaggcctacaatgccgacttcgatggagaccaaatggccatccacgtg
ccactttcagaagaagcacaagctgaagctcgtcttttgatgcttgctgcagagcacatc
ttgaaccctaaagatggcaaaccagttgttactccatctcaggatatggttcttggtaac
tactatcttacgatggaagatgctggtcgcgaaggcgaaggcatgatcttcaaggataaa
gacgaagctgtgatggcatatcgtaatggttatgctcacttgcatagtcgtgtgggtatc
gctgttgacagcatgccaaacaaaccttggaaagatagccaaagacataaaatcatggtg
acaactgttggtaagattttgtttaacgacatcatgccagaggaccttccttaccttcaa
gagccaaacaatgccaacttgacagaaggaacacctgataaatacttccttgaacctggt
caagacatccaagaagtgattgacggcttagacatcaatgtgccatttaagaagaaaaac
cttggtaacatcattgcggaaaccttcaaacgtttccgtacaacagaaacatcagccttc
cttgaccgtttgaaagaccttggttactaccattcaacccttgctggtttgacagtgggt
atcgctgacattcctgttattgataataaagctgaaatcattgatgctgctcaccatcgt
gttgaagaaattaacaaagccttccgtcgtggtttgatgacagatgatgaccgttatgtt
gccgttacaacaacatggcgtgaagctaaagaagcccttgaaaaacgtctgattgaaaca
caagatcctaagaacccaatcgttatgatgatggactcaggagctcgtggtaacatctct
aacttctcacagcttgcgggtatgcgtggtttgatggctgctcccaacggacgcatcatg
gaacttcctatcttgtcaaacttccgtgaaggtttgagcgttttggaaatgttcttctca
acccacggtgcacgtaaagggatgaccgatacggcccttaaaacagccgactcaggttac
cttactcgtcgtttggttgacgttgcccaagatgttatcattcgtgaggacgattgtggc
actgaccgtggtcttcttatccgtgctattaccgatggtaaagaggttaccgaaactctt
gaagagcgtcttcaaggtcgttacacacgtaaatcagtcaaacaccctgaaactggtgaa
gtcttgattggtgctgaccaattaatcactgaagacatggcacgtaagattgttgatgcg
ggtgttgaagaagtgaccattcgttctgtctttacctgtgcgactcgtcatggtgtctgc
cgtcactgttatggtatcaaccttgcaactggtgatgctgttgaagttggtgaagcagtt
ggtaccatcgctgcgcaatctatcggtgagcctggtactcagcttaccatgcgtaccttc
cacacgggtggtgtagcctcaaataccgatatcacacagggtcttcctcgtattcaagaa
atctttgaagcacgtaaccctaaaggggaagcggtcattactgaagtgaaaggtaatgtc
gtcgagattgaagaagatgcgtcaactcgtaccaagaaagtctacgttcaaggtaaaact
ggtatgggtgaatacgtcgtaccatttacagcacgtatgaaagttgaagttggcgacgaa
gttaatcgcggagctgcccttacagaagggtcaattcaaccgaaacgtctccttgaagtg
cgtgataccttgtcagttgaaacgtaccttcttgcagaagtacaaaaagtttaccgtagc
caaggggtagaaatcggagacaaacacgttgaggtaatggttcgccaaatgcttcgtaaa
gttcgtgtcatggatccaggtgatacagacctccttccaggtacacttatggatatttct
gatttcacagatgctaacaaagatattgttatctctggtggtattcctgcgacatctcgt
cctgttcttatgggtattactaaggcttcccttgaaaccaattccttcttatcagctgca
tccttccaagaaacaactcgtgttcttacagatgctgctatccgtggtaagaaagaccac
ttacttggtcttaaagaaaatgttatcattggtaaaatcattccagctggtactggtatg
gcgcgctaccgtaacattgaaccacaagcaatcaatgatgttgaagttattgacaagcca
gaagtttctgaagaaacagttgctgcaactgaaacagaataa
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integrated database retrieval system
