KEGG   Shewanella denitrificans: Sden_0164
Entry
Sden_0164         CDS       T00344                                 
Name
(GenBank) DNA-directed RNA polymerase, subunit beta-prime
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sdn  Shewanella denitrificans
Pathway
sdn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sdn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Sden_0164
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sdn03021]
    Sden_0164
   03400 DNA repair and recombination proteins [BR:sdn03400]
    Sden_0164
Enzymes [BR:sdn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Sden_0164
Transcription machinery [BR:sdn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Sden_0164
DNA repair and recombination proteins [BR:sdn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Sden_0164
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23 Apocytochr_F_C DUF2267
Other DBs
NCBI-ProteinID: ABE53461
UniProt: Q12SW5
LinkDB
Position
187204..191436
AA seq 1410 aa
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTTLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAINLEEQIEQMREELPSINSETRRKKVTKRLKLMEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREQAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMVFADVSEVEKAYATG
VAEIHARVKVRITETSIDADGEKTKATRIVDTTIGRALLSLILPEGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSVETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGAEHGLTMKPLIEGGDVVEPLRERVL
GRVVAIDVIKPGSEEILAPRNTLLDEAWCDILEEHSVDEVIVRSVITCETDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGSLKL
HNAKHVSNIDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEDSEVTAGEIIANW
DPHTHPIISEVAGSVKFVDMIDGVTMTRQTDELTGLSSVVVLDVGARTSAGKELRPAIRL
VGADGNDLMIPGTDVPAQYFLPGNAIVAKDDNAKINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGSEHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSAGDTEFLEGEQAEVARVKIANRELIAQGKTPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDQLRGLKENVIVGRLIPAGTGYAYHKKRNALRATEDAKK
AAAKIAPAVTTASEAEQNLADLLNLAGGEE
NT seq 4233 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttcttaaacagcaaagtaagactgaagaatttaacggtata
aaaatcggtttggcttcgccagacttgatccgttcttggtcatttggtgaagttaaaaag
ccagaaaccattaactaccgtacattcaagccagaacgtgaaggtttgttctgtgcgcgt
atcttcggtccagtgaaagattacgaatgtttgtgcggtaagtacaagcgtttgaagcac
cgtggtgtgatctgtgaaaagtgtggcgtagaagttacccagactaaagtacgtcgtgag
cgtatgggtcacattgatcttgcaagcccagttgcccatatttggttcttgaaatcactt
ccgtcacgtatcggcttaatgctggatatgacgttgcgtgatattgaacgcgtactgtat
ttcgaatcatttgtcgttatcgagcctggcatgaccacgcttgagcgcggccaaatgctg
actgaagaaacgtatcttgatgcgttagaagaatacggtgatgagttcgaagctaagatg
ggtgccgaagcagtgttagaattgctacgtgctatcaacttagaagagcagatcgagcaa
atgcgtgaagagttgccgtcaatcaactctgaaacccgtcgcaagaaggtcactaagcgc
cttaagctgatggaagcattcttcacttctggcaacaagccagagtggatgatcttaaaa
gtattaccggttctgccacctgatctacgtccattagtgccgttagatggtggtcgtttc
gcgacgtcagatcttaacgatttgtaccgccgcgtgatcaaccgtaacaaccgtttaaag
cgtctgttagatttagctgcgcctgacattatcgtacgtaacgaaaagcgtatgttacaa
gagtcagttgatgcgctattggataacggtcgtcgcggtcgtgctattaccggttctaac
aagcgtccgcttaaatctcttgccgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgttgactattcaggccgttcggtaattaccgtaggtccaact
ttgcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctgttcaagcctttc
atttatggcaagttagaaggtcgtggcttagctactaccatcaaagcggctaagaaaatg
gttgaacgtgagcaggcagaagtatgggatgtgctagacgaagtgattcgtgaacatcca
gtcatgcttaaccgtgcaccaacacttcacagattaggtattcaagcatttgaacctgtg
ctgattgaaggtaaagcaattcaattgcacccgttagtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggctgttcacgtaccattaacgcttgaagctcagttagaagct
cgcgcgctgatgatgtcgactaacaacattctgtcacctgctaacggtgagcctgttatt
acaccgtctcaggacgttgtacttggcttgtactacaccagtcgtgagcgcatcaatggc
cgcggagaaggcatggtcttcgctgatgtgtctgaagtagagaaagcttatgccactggc
gtagctgaaatacatgctcgcgttaaagtacgtattacagaaacgagcatagatgctgat
ggtgaaaaaactaaagcaacgcgtattgtagataccacgattggtcgtgctttactgtcg
cttattctgcctgaaggcttatcttatgatttggttaaccagaacatgggtaagaagcag
atttctaaattgctcaacacttgttaccgtcaattaggccttaaagatacggttatcttt
gctgaccaattgatgtataccggtttccgttttgcaaccatttcaggtgcctctgtgggt
atcgatgacatggttattcctgacgagaaatacaccttagttgccgatgcggaagcggaa
gttcttgaaattcaagagcaattccagtctggtctagtaactgccggtgagcgttacaac
aaggttatcgatatctgggcaagcgctaacgaaaaagtctctaaggctatgatggaaaac
ctgtcggttgagacagtgattaaccgtgatggcgtagaagagaagcaagcttcgtttaac
agcatctatatgatggctgactcgggcgctcgtggtagtgctgcacagatacgtcagtta
gcgggtatgcgtggtctgatggcaaaaccagatggttctatcatcgaaaccccaattacg
gctaacttccgtgaaggtctaaacgtactccagtactttatttctactcacggtgcacgt
aaaggtcttgccgataccgcattgaagacagcgaactcgggttacctgactcgtcgttta
gtagacgtggctcaagacttagtcgtcattgaagatgactgtggtgctgagcacggatta
acaatgaagccgctaattgaaggtggtgatgttgttgagccgttgcgtgagcgcgtactg
ggtcgtgtggtggctattgatgttatcaagccaggcagtgaagaaattcttgctccacgt
aacactctgctcgatgaagcatggtgtgacatcttagaagaacacagtgttgacgaagtt
atcgtgcgctctgttatcacctgtgaaacagactttggtgtgtgtgctgcttgttatggt
cgtgatttggctcgtggtcatatcattaaccacggtgaagcgattggtgttgtagctgct
cagtcaattggtgagccaggtacacagttaaccatgcgtaccttccacatcggtggtgcg
gcatcgcgagcttctgcagaaaacaacgttcaagttaagaacgcgggttctctgaagtta
cacaacgctaagcatgtttctaacatcgacggcaaactggttattgtgtctcgctcgtct
gaacttgccattatcgatgagctaggtcgtgagaaagagcgttacaaggtgccttacggt
actgtgcttgagaaattggaagacagtgaagttacagcaggcgaaatcatcgctaactgg
gatccacatactcacccaattatctctgaagttgccggtagcgtgaagttcgttgacatg
atcgacggcgtgaccatgacgcgtcaaactgacgagttaaccggtctttcttctgttgtg
gtactagacgtaggtgctcgtacttcagccggtaaagaactgcgtcctgctattcgctta
gttggcgccgatggtaatgacttaatgatccctggtactgatgtaccggctcagtatttc
ttaccgggtaacgcgattgttgctaaagacgataacgctaagatcaacgttggtgacgca
ttagcacgtattccacaagaatcgtctaaaacacgcgatatcacaggtggtctaccacgt
gttgctgacttatttgaagcgcgtaagccgaaagagcctgcaattcttgcagagatctca
ggtactatttcgttcggtaaggaaactaagggtaagcgtcgtctagtgatcactccagct
gatggtagtgaacattacgaagagatgatccctaagtggcgtaacttgaacgtgttcgaa
ggtgaaaaagttgaacgtggcgaagtcatcgctgacggtccagaagcggcacatgacatc
ttacgtcttcgtggtatccacaacgtagcaaactacattgtgaacgaagtacaggatgtt
taccgtctacagggcgttaagatcaacgacaagcacatcgaagttatcattcgtcagatg
ctacgtaagtgcttaatcacctcagcaggggacactgagttccttgagggcgaacaagca
gaagtcgcgcgggttaagattgctaaccgtgagctcatcgctcaaggtaaaacacctgca
accttcgaacgtgaattactcggtatcaccaaagcctctttggcgactgaatcattcatc
tctgcagcatcgttccaggaaaccactcgcgtgttaactgaagcggctgttggcggaaag
agcgatcaattacgtggtctgaaagaaaacgtaatcgtgggtcgtttgatccccgcgggt
accggttatgcttaccataagaagcgtaacgcgcttcgtgctacagaagatgccaagaaa
gcggcagctaaaatagcacctgcagtaaccactgccagcgaagctgagcagaacctagca
gacctactaaacttggccggtggcgaagaataa

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