Shewanella denitrificans: Sden_0164
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Entry
Sden_0164 CDS
T00344
Name
(GenBank) DNA-directed RNA polymerase, subunit beta-prime
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sden_0164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdn03021
]
Sden_0164
03400 DNA repair and recombination proteins [BR:
sdn03400
]
Sden_0164
Enzymes [BR:
sdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sden_0164
Transcription machinery [BR:
sdn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sden_0164
DNA repair and recombination proteins [BR:
sdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sden_0164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
DUF2267
Motif
Other DBs
NCBI-ProteinID:
ABE53461
UniProt:
Q12SW5
LinkDB
All DBs
Position
187204..191436
Genome browser
AA seq
1410 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTTLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAINLEEQIEQMREELPSINSETRRKKVTKRLKLMEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREQAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMVFADVSEVEKAYATG
VAEIHARVKVRITETSIDADGEKTKATRIVDTTIGRALLSLILPEGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSVETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGAEHGLTMKPLIEGGDVVEPLRERVL
GRVVAIDVIKPGSEEILAPRNTLLDEAWCDILEEHSVDEVIVRSVITCETDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGSLKL
HNAKHVSNIDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEDSEVTAGEIIANW
DPHTHPIISEVAGSVKFVDMIDGVTMTRQTDELTGLSSVVVLDVGARTSAGKELRPAIRL
VGADGNDLMIPGTDVPAQYFLPGNAIVAKDDNAKINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGSEHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSAGDTEFLEGEQAEVARVKIANRELIAQGKTPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDQLRGLKENVIVGRLIPAGTGYAYHKKRNALRATEDAKK
AAAKIAPAVTTASEAEQNLADLLNLAGGEE
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttcttaaacagcaaagtaagactgaagaatttaacggtata
aaaatcggtttggcttcgccagacttgatccgttcttggtcatttggtgaagttaaaaag
ccagaaaccattaactaccgtacattcaagccagaacgtgaaggtttgttctgtgcgcgt
atcttcggtccagtgaaagattacgaatgtttgtgcggtaagtacaagcgtttgaagcac
cgtggtgtgatctgtgaaaagtgtggcgtagaagttacccagactaaagtacgtcgtgag
cgtatgggtcacattgatcttgcaagcccagttgcccatatttggttcttgaaatcactt
ccgtcacgtatcggcttaatgctggatatgacgttgcgtgatattgaacgcgtactgtat
ttcgaatcatttgtcgttatcgagcctggcatgaccacgcttgagcgcggccaaatgctg
actgaagaaacgtatcttgatgcgttagaagaatacggtgatgagttcgaagctaagatg
ggtgccgaagcagtgttagaattgctacgtgctatcaacttagaagagcagatcgagcaa
atgcgtgaagagttgccgtcaatcaactctgaaacccgtcgcaagaaggtcactaagcgc
cttaagctgatggaagcattcttcacttctggcaacaagccagagtggatgatcttaaaa
gtattaccggttctgccacctgatctacgtccattagtgccgttagatggtggtcgtttc
gcgacgtcagatcttaacgatttgtaccgccgcgtgatcaaccgtaacaaccgtttaaag
cgtctgttagatttagctgcgcctgacattatcgtacgtaacgaaaagcgtatgttacaa
gagtcagttgatgcgctattggataacggtcgtcgcggtcgtgctattaccggttctaac
aagcgtccgcttaaatctcttgccgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgttgactattcaggccgttcggtaattaccgtaggtccaact
ttgcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctgttcaagcctttc
atttatggcaagttagaaggtcgtggcttagctactaccatcaaagcggctaagaaaatg
gttgaacgtgagcaggcagaagtatgggatgtgctagacgaagtgattcgtgaacatcca
gtcatgcttaaccgtgcaccaacacttcacagattaggtattcaagcatttgaacctgtg
ctgattgaaggtaaagcaattcaattgcacccgttagtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggctgttcacgtaccattaacgcttgaagctcagttagaagct
cgcgcgctgatgatgtcgactaacaacattctgtcacctgctaacggtgagcctgttatt
acaccgtctcaggacgttgtacttggcttgtactacaccagtcgtgagcgcatcaatggc
cgcggagaaggcatggtcttcgctgatgtgtctgaagtagagaaagcttatgccactggc
gtagctgaaatacatgctcgcgttaaagtacgtattacagaaacgagcatagatgctgat
ggtgaaaaaactaaagcaacgcgtattgtagataccacgattggtcgtgctttactgtcg
cttattctgcctgaaggcttatcttatgatttggttaaccagaacatgggtaagaagcag
atttctaaattgctcaacacttgttaccgtcaattaggccttaaagatacggttatcttt
gctgaccaattgatgtataccggtttccgttttgcaaccatttcaggtgcctctgtgggt
atcgatgacatggttattcctgacgagaaatacaccttagttgccgatgcggaagcggaa
gttcttgaaattcaagagcaattccagtctggtctagtaactgccggtgagcgttacaac
aaggttatcgatatctgggcaagcgctaacgaaaaagtctctaaggctatgatggaaaac
ctgtcggttgagacagtgattaaccgtgatggcgtagaagagaagcaagcttcgtttaac
agcatctatatgatggctgactcgggcgctcgtggtagtgctgcacagatacgtcagtta
gcgggtatgcgtggtctgatggcaaaaccagatggttctatcatcgaaaccccaattacg
gctaacttccgtgaaggtctaaacgtactccagtactttatttctactcacggtgcacgt
aaaggtcttgccgataccgcattgaagacagcgaactcgggttacctgactcgtcgttta
gtagacgtggctcaagacttagtcgtcattgaagatgactgtggtgctgagcacggatta
acaatgaagccgctaattgaaggtggtgatgttgttgagccgttgcgtgagcgcgtactg
ggtcgtgtggtggctattgatgttatcaagccaggcagtgaagaaattcttgctccacgt
aacactctgctcgatgaagcatggtgtgacatcttagaagaacacagtgttgacgaagtt
atcgtgcgctctgttatcacctgtgaaacagactttggtgtgtgtgctgcttgttatggt
cgtgatttggctcgtggtcatatcattaaccacggtgaagcgattggtgttgtagctgct
cagtcaattggtgagccaggtacacagttaaccatgcgtaccttccacatcggtggtgcg
gcatcgcgagcttctgcagaaaacaacgttcaagttaagaacgcgggttctctgaagtta
cacaacgctaagcatgtttctaacatcgacggcaaactggttattgtgtctcgctcgtct
gaacttgccattatcgatgagctaggtcgtgagaaagagcgttacaaggtgccttacggt
actgtgcttgagaaattggaagacagtgaagttacagcaggcgaaatcatcgctaactgg
gatccacatactcacccaattatctctgaagttgccggtagcgtgaagttcgttgacatg
atcgacggcgtgaccatgacgcgtcaaactgacgagttaaccggtctttcttctgttgtg
gtactagacgtaggtgctcgtacttcagccggtaaagaactgcgtcctgctattcgctta
gttggcgccgatggtaatgacttaatgatccctggtactgatgtaccggctcagtatttc
ttaccgggtaacgcgattgttgctaaagacgataacgctaagatcaacgttggtgacgca
ttagcacgtattccacaagaatcgtctaaaacacgcgatatcacaggtggtctaccacgt
gttgctgacttatttgaagcgcgtaagccgaaagagcctgcaattcttgcagagatctca
ggtactatttcgttcggtaaggaaactaagggtaagcgtcgtctagtgatcactccagct
gatggtagtgaacattacgaagagatgatccctaagtggcgtaacttgaacgtgttcgaa
ggtgaaaaagttgaacgtggcgaagtcatcgctgacggtccagaagcggcacatgacatc
ttacgtcttcgtggtatccacaacgtagcaaactacattgtgaacgaagtacaggatgtt
taccgtctacagggcgttaagatcaacgacaagcacatcgaagttatcattcgtcagatg
ctacgtaagtgcttaatcacctcagcaggggacactgagttccttgagggcgaacaagca
gaagtcgcgcgggttaagattgctaaccgtgagctcatcgctcaaggtaaaacacctgca
accttcgaacgtgaattactcggtatcaccaaagcctctttggcgactgaatcattcatc
tctgcagcatcgttccaggaaaccactcgcgtgttaactgaagcggctgttggcggaaag
agcgatcaattacgtggtctgaaagaaaacgtaatcgtgggtcgtttgatccccgcgggt
accggttatgcttaccataagaagcgtaacgcgcttcgtgctacagaagatgccaagaaa
gcggcagctaaaatagcacctgcagtaaccactgccagcgaagctgagcagaacctagca
gacctactaaacttggccggtggcgaagaataa
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integrated database retrieval system