KEGG   Shewanella denitrificans: Sden_1948
Entry
Sden_1948         CDS       T00344                                 
Name
(GenBank) DNA gyrase subunit A
  KO
K02469  DNA gyrase subunit A [EC:5.6.2.2]
Organism
sdn  Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:sdn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdn03032]
    Sden_1948
   03400 DNA repair and recombination proteins [BR:sdn03400]
    Sden_1948
Enzymes [BR:sdn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Sden_1948
DNA replication proteins [BR:sdn03032]
 Prokaryotic type
  DNA Topoisomerases
   Sden_1948
DNA repair and recombination proteins [BR:sdn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Sden_1948
SSDB
Motif
Pfam: DNA_topoisoIV DNA_gyraseA_C
Other DBs
NCBI-ProteinID: ABE55231
UniProt: Q12MU5
LinkDB
Position
complement(2306685..2309411)
AA seq 908 aa
MTDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWN
KPYKKSARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSLRYTLVDGQGNFGSVDGDSAAAM
RYTEIRMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMAT
NIPPHNLTEVVKGCLALIDEPSLSIEQLMEYIPGPDFPTAASINGRKGIIDAYKTGRGRA
VMRSKAEIETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM
RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREV
VTRRTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKLQLVAQGWELGHVQ
GMLEKAGDDAARPEWLEPEYGIRDGQYFLTEQQAQAILELRLHRLTGLEHEKILSEYEEL
LIVIAGLLLILRSPERLMEVIKEELEEVLEQYGDVRRTIINENEIDMSLEDLINEEDVVV
TLSHTGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYW
LKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYADDKFIIMATAHGTVKKTALT
AYSNPRANGIIAVNLKDGDQLIGVDITDGSDDIMLFSNEGKVVRFNEKARDSETGEVKID
AETGEEIIALRPMGRTATGVRGIKLEDGQKVVSLIVPKGDGAILTVTENGYGKRTELNEY
PAKSRGTKGVVSIKVTERNGAVVGAVQVGEFDEIMLISDKGTLVRTPAEGVSIIGRNTQG
VTIIRTAEDEKVVGLQRIEEIQTDEILDADGNVIVPAESVDGDELSTDTRATATEAPAQT
DSAEDEQE
NT seq 2727 nt   +upstreamnt  +downstreamnt
atgactgatctggcatcatctatttcgccaattaatatcgaagacgaactaaagaattct
taccttgattacgccatgagcgtaatcgtaggccgcgcactaccggatgtacgtgatggc
ttaaagcctgtgcatcgccgggtgctattcgccatgagcgaattaaagaacgattggaat
aaaccttataagaaatccgctcgtgtggtcggtgacgtaatcggtaagtatcaccctcat
ggtgatagcgccgtatatgacgcgattgttcgtttagcgcagccgttttcactgcgttac
accttagtcgatggtcaaggtaacttcggttcggtggatggcgatagcgcggcagcaatg
cgttataccgaaatccgtatgcagaaattagcccattcactactggctgatcttgaaaaa
gaaaccgtggattttgtgcctaactatgacggcactgaaatgatccctgcggtattgccg
actcgggtacctaacctgttgatcaacggttcatcgggtatcgctgtaggtatggcgacg
aatattccaccacacaacttaacggaagtggttaaaggctgtttagccttaatcgatgag
ccaagcttgtccattgaacagttgatggaatatatcccaggcccagatttcccaacggca
gcgtctatcaacggtcgtaaaggcattattgatgcctataaaaccggtcgcggccgcgca
gtaatgcgctcaaaagctgaaattgaaaccgaagataacggccgcgagcgtattatcgtt
cacgaaattccgtaccaggtgaacaaagcccgcctaattgagaaaattgccgagctagtc
aaagacaagaaaatcgaaggcattagcggtttacgtgatgagtctgataaagacggcatg
cgtatcgtgattgaaatcaaacgcggcgaagtgggcgaggtagtattaaacaacctttat
gcccaaactcagatgcagtgttcttttggcattaacatggtggcgttaaccaacggccaa
cctaagttatttaacctgaaagaaatgcttgagtgctttattcttcaccgccgtgaagtg
gtcacccgccgcaccgtattcgaactgcgtaaagcccgcgaacgtgcgcatattttagaa
gcgttagccatagcactggcaaacattgacccgattatcgcgttaatcaaagcctcgcca
acaccagcagaagctaagctgcaattggttgcacaaggttgggaacttggccatgtacaa
ggcatgcttgaaaaagccggcgatgatgcggcgcgtcctgaatggttagagccagaatac
ggcatccgtgatggtcaatacttcctcactgagcagcaagcccaggcgattcttgagtta
cgtcttcacagattaactggccttgaacatgaaaaaattctgtcagaatatgaagaatta
ttgattgttattgcgggactactgcttattcttcgtagcccagagcgtttgatggaagtc
atcaaggaagagcttgaagaagtgcttgagcaatacggtgacgtgcgccgcaccataatc
aacgaaaacgaaatcgatatgagtcttgaagatcttatcaatgaagaagacgttgtggtg
accttgtctcacacaggttatgccaagtaccagccgttatctgattaccaggctcagcgc
cgtggtggtaaaggcaaggctgcgaccaaggtaaaagatgaagatttcgtcgagaaacta
ctggtggcgaatacacacgacaccatattgtgcttctcagacttcggtaagatgtactgg
ctaaaagtgtatcaattaccgcttgcgagccgtacagcccgtggtcgacctattgttaac
ttgctgccgctatccgatggcgagcgtatcacggctatattgccagtgcgtgaatacgcc
gatgataagtttattatcatggcgactgctcacggtacggtgaagaaaacggcgttaacg
gcttacagcaatccaagagcgaacggcattattgcggtgaacttaaaagatggcgatcag
ctgattggcgttgatattactgacggcagcgacgacatcatgttgttctctaacgaaggt
aaagtggtacgtttcaacgagaaagcgcgcgactctgaaaccggtgaagtgaagattgac
gccgaaactggcgaagaaatcattgcgctgcgtccaatgggccgcaccgcaaccggcgtt
cgtggtattaagcttgaagatggccagaaagtggtttcacttattgtgcctaaaggcgat
ggcgctatcttaactgtgaccgaaaacggttatggcaagcgtactgaactgaatgaatac
ccagctaagagccgcggcactaaaggtgtggtttctatcaaggtcacagaacgtaacggc
gccgttgttggtgctgtgcaagtgggtgagtttgatgaaattatgcttatcagtgataaa
ggcaccttagtacgtaccccagctgaaggcgtgtccattataggccgtaacactcaaggc
gtgaccatcattcgcaccgcagaagacgagaaagtcgtcggtttgcagcgcattgaagaa
attcaaactgatgagatcctcgatgccgacggcaacgtgatagtgcctgctgagtctgtc
gatggtgatgagctaagcactgatactcgtgctacagccactgaagcccctgctcaaaca
gacagtgctgaagacgagcaagaataa

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