Shewanella denitrificans: Sden_1948
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Entry
Sden_1948 CDS
T00344
Name
(GenBank) DNA gyrase subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdn03032
]
Sden_1948
03400 DNA repair and recombination proteins [BR:
sdn03400
]
Sden_1948
Enzymes [BR:
sdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Sden_1948
DNA replication proteins [BR:
sdn03032
]
Prokaryotic type
DNA Topoisomerases
Sden_1948
DNA repair and recombination proteins [BR:
sdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Sden_1948
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
ABE55231
UniProt:
Q12MU5
LinkDB
All DBs
Position
complement(2306685..2309411)
Genome browser
AA seq
908 aa
AA seq
DB search
MTDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWN
KPYKKSARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSLRYTLVDGQGNFGSVDGDSAAAM
RYTEIRMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMAT
NIPPHNLTEVVKGCLALIDEPSLSIEQLMEYIPGPDFPTAASINGRKGIIDAYKTGRGRA
VMRSKAEIETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM
RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREV
VTRRTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKLQLVAQGWELGHVQ
GMLEKAGDDAARPEWLEPEYGIRDGQYFLTEQQAQAILELRLHRLTGLEHEKILSEYEEL
LIVIAGLLLILRSPERLMEVIKEELEEVLEQYGDVRRTIINENEIDMSLEDLINEEDVVV
TLSHTGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYW
LKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYADDKFIIMATAHGTVKKTALT
AYSNPRANGIIAVNLKDGDQLIGVDITDGSDDIMLFSNEGKVVRFNEKARDSETGEVKID
AETGEEIIALRPMGRTATGVRGIKLEDGQKVVSLIVPKGDGAILTVTENGYGKRTELNEY
PAKSRGTKGVVSIKVTERNGAVVGAVQVGEFDEIMLISDKGTLVRTPAEGVSIIGRNTQG
VTIIRTAEDEKVVGLQRIEEIQTDEILDADGNVIVPAESVDGDELSTDTRATATEAPAQT
DSAEDEQE
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgactgatctggcatcatctatttcgccaattaatatcgaagacgaactaaagaattct
taccttgattacgccatgagcgtaatcgtaggccgcgcactaccggatgtacgtgatggc
ttaaagcctgtgcatcgccgggtgctattcgccatgagcgaattaaagaacgattggaat
aaaccttataagaaatccgctcgtgtggtcggtgacgtaatcggtaagtatcaccctcat
ggtgatagcgccgtatatgacgcgattgttcgtttagcgcagccgttttcactgcgttac
accttagtcgatggtcaaggtaacttcggttcggtggatggcgatagcgcggcagcaatg
cgttataccgaaatccgtatgcagaaattagcccattcactactggctgatcttgaaaaa
gaaaccgtggattttgtgcctaactatgacggcactgaaatgatccctgcggtattgccg
actcgggtacctaacctgttgatcaacggttcatcgggtatcgctgtaggtatggcgacg
aatattccaccacacaacttaacggaagtggttaaaggctgtttagccttaatcgatgag
ccaagcttgtccattgaacagttgatggaatatatcccaggcccagatttcccaacggca
gcgtctatcaacggtcgtaaaggcattattgatgcctataaaaccggtcgcggccgcgca
gtaatgcgctcaaaagctgaaattgaaaccgaagataacggccgcgagcgtattatcgtt
cacgaaattccgtaccaggtgaacaaagcccgcctaattgagaaaattgccgagctagtc
aaagacaagaaaatcgaaggcattagcggtttacgtgatgagtctgataaagacggcatg
cgtatcgtgattgaaatcaaacgcggcgaagtgggcgaggtagtattaaacaacctttat
gcccaaactcagatgcagtgttcttttggcattaacatggtggcgttaaccaacggccaa
cctaagttatttaacctgaaagaaatgcttgagtgctttattcttcaccgccgtgaagtg
gtcacccgccgcaccgtattcgaactgcgtaaagcccgcgaacgtgcgcatattttagaa
gcgttagccatagcactggcaaacattgacccgattatcgcgttaatcaaagcctcgcca
acaccagcagaagctaagctgcaattggttgcacaaggttgggaacttggccatgtacaa
ggcatgcttgaaaaagccggcgatgatgcggcgcgtcctgaatggttagagccagaatac
ggcatccgtgatggtcaatacttcctcactgagcagcaagcccaggcgattcttgagtta
cgtcttcacagattaactggccttgaacatgaaaaaattctgtcagaatatgaagaatta
ttgattgttattgcgggactactgcttattcttcgtagcccagagcgtttgatggaagtc
atcaaggaagagcttgaagaagtgcttgagcaatacggtgacgtgcgccgcaccataatc
aacgaaaacgaaatcgatatgagtcttgaagatcttatcaatgaagaagacgttgtggtg
accttgtctcacacaggttatgccaagtaccagccgttatctgattaccaggctcagcgc
cgtggtggtaaaggcaaggctgcgaccaaggtaaaagatgaagatttcgtcgagaaacta
ctggtggcgaatacacacgacaccatattgtgcttctcagacttcggtaagatgtactgg
ctaaaagtgtatcaattaccgcttgcgagccgtacagcccgtggtcgacctattgttaac
ttgctgccgctatccgatggcgagcgtatcacggctatattgccagtgcgtgaatacgcc
gatgataagtttattatcatggcgactgctcacggtacggtgaagaaaacggcgttaacg
gcttacagcaatccaagagcgaacggcattattgcggtgaacttaaaagatggcgatcag
ctgattggcgttgatattactgacggcagcgacgacatcatgttgttctctaacgaaggt
aaagtggtacgtttcaacgagaaagcgcgcgactctgaaaccggtgaagtgaagattgac
gccgaaactggcgaagaaatcattgcgctgcgtccaatgggccgcaccgcaaccggcgtt
cgtggtattaagcttgaagatggccagaaagtggtttcacttattgtgcctaaaggcgat
ggcgctatcttaactgtgaccgaaaacggttatggcaagcgtactgaactgaatgaatac
ccagctaagagccgcggcactaaaggtgtggtttctatcaaggtcacagaacgtaacggc
gccgttgttggtgctgtgcaagtgggtgagtttgatgaaattatgcttatcagtgataaa
ggcaccttagtacgtaccccagctgaaggcgtgtccattataggccgtaacactcaaggc
gtgaccatcattcgcaccgcagaagacgagaaagtcgtcggtttgcagcgcattgaagaa
attcaaactgatgagatcctcgatgccgacggcaacgtgatagtgcctgctgagtctgtc
gatggtgatgagctaagcactgatactcgtgctacagccactgaagcccctgctcaaaca
gacagtgctgaagacgagcaagaataa
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