Shewanella denitrificans: Sden_3096
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Entry
Sden_3096 CDS
T00344
Name
(GenBank) transcriptional regulator, LuxR family
KO
K20918
LuxR family transcriptional regulator, positive regulator of biofilm formation
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdn03000
]
Sden_3096
Transcription factors [BR:
sdn03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
Sden_3096
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GerE
Sigma70_r4_2
Sigma70_r4
MecA
HTH_23
DUF6362
DUF2851
VpsT-like_REC
HTH_29
HTH_40
HTH_10
Motif
Other DBs
NCBI-ProteinID:
ABE56373
UniProt:
Q12JK3
LinkDB
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Position
complement(3719358..3720026)
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AA seq
222 aa
AA seq
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MSSNIDELVFLHQVAAPCHLAILAESIGMKTRIVRQASELEQEKKINSFYMIAQKGAALD
NKGIPLLVSRLVNHVPVALYQVERGSLDQESALLLGVRGLLYADQRMDLMLTGLRKMVAN
ELWYDRPLISRIFRRLVQKLDANNDMPADTIAMLQMLTNRERTIIQLVSSGARNKEIAHR
LCISEHTVKAHLSSVFRKTQSRNRVELLRWAQTYQAHFEFQS
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaaatatcgacgaattagtatttttacatcaggtggcagcgccttgccacttg
gctattttagccgaatcaatcggaatgaaaacccgtatcgtaagacaagcctcagagtta
gaacaagagaaaaaaattaatagtttctatatgatagcccaaaaaggcgcggccttagat
aacaagggtatccctctattggtgtctcgtttggttaaccatgtcccggtggccttatac
caagttgaacgcggctctctggatcaagaatcggcgttattgttgggggtgcgtgggctg
ttatatgctgatcagcgaatggatttaatgcttacgggtcttaggaagatggtggctaat
gaactttggtatgatagacctttgattagtcggattttccgccggttagtacaaaagctg
gatgcgaataatgatatgcctgcagatactatcgccatgctgcagatgctcaccaatcgt
gagagaaccataattcaattagtgtccagtggtgcaagaaataaagaaattgcccatcga
ttatgtatcagtgagcataccgttaaggcgcacttgtcttcagttttccgtaaaactcaa
tcccgcaatcgagtcgagttactgcgttgggcgcaaacttaccaagcgcatttcgaattt
caatcttga
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