KEGG   Salmonella enterica subsp. enterica serovar Heidelberg 41578: SEEH1578_06955
Entry
SEEH1578_06955    CDS       T02736                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
seeh  Salmonella enterica subsp. enterica serovar Heidelberg 41578
Pathway
seeh03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:seeh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SEEH1578_06955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:seeh03021]
    SEEH1578_06955
   03400 DNA repair and recombination proteins [BR:seeh03400]
    SEEH1578_06955
Enzymes [BR:seeh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SEEH1578_06955
Transcription machinery [BR:seeh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SEEH1578_06955
DNA repair and recombination proteins [BR:seeh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SEEH1578_06955
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AGQ62992
LinkDB
Position
1331805..1336028
AA seq 1407 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAHTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEANSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPA
TPQVTAEDASASLAELLNAGLGGSDNE
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgttatttgtgagaagtgcggcgttgaagtgacccagaccaaagtacgccgtgag
cgtatgggccacatcgagctggcgtctccgactgctcacatctggttcctgaaatcgctg
ccgtcccgtatcggtctgctgctcgatatgccgttgcgcgatatcgaacgcgtactgtac
ttcgaatcttatgtggttatcgaaggcggtatgaccaacctggaacgtcaacagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctatccaggccctgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaaactgctggaagccttcgtacagtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtcgacgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcaccagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggccttgccaccaccatcaaagccgcgaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatccttgacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccgactctgcaccgtctgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagcttgaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtctccggcgaacggcgaacctatcatc
gttccgtctcaggacgtggtattgggtctgtactatatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatctatcgcgcaggt
ctggcctctctgcatgcgcgcgttaaagtgcgtatcactgaatatgaaaaagatgaaaac
ggcgaattcgttgcgcacaccagcctgaaagacacgaccgttggtcgcgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcg
atctccaaaatgctgaacacttgctaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcgtccgttggt
attgatgacatggtcatcccggagaaaaaacacgagatcatctctgaggcggaagcggaa
gttgctgagatccaggagcagttccagtctggtctggtaaccgctggcgaacgctataac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaaccgaaaccgtgattaaccgtgacggccaggaagagcagcaggtctccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctt
gctggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgcgcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgactcgtcgtctg
gttgacgtcgcgcaggatctggtggtgaccgaagatgactgtggtacgcacgaaggtatc
ctgatgaccccggttatcgagggtggcgacgtgaaagagccgctgcgtgaccgcgttctg
ggtcgtgtgacggcggaagatgtgctgaaaccgggtaccgcggacattctggttccacgc
aacacgctgctgcacgaacagtggtgtgacctgctggaagcaaactccgttgacgccgtt
aaagtgcgttccgttgtatcctgcgacaccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagctatcggcgttatcgcggca
cagtccatcggtgaaccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggttaagaacaaaggtagcatcaagctc
agcaacgtgaagtcggttgtgaactccagcggtaaactggttatcacttcccgtaacacc
gaactgaagctgatcgacgaattcggtcgtaccaaagagagctataaagtgccttatggc
gctgtcatggcgaaaggtgatggcgagcaggttgccggcggcgaaaccgtggcaaactgg
gacccgcacaccatgccggttatcaccgaagtgagtggtttcatccgcttcactgacatg
atcgacggtcagaccattacgcgtcagaccgacgaactgaccggtttgtcttcgctggtg
gttctggattcggctgaacgtactaccggtggtaaagatctgcgtccggcgctgaaaatc
gttgatgctcagggtaatgacgttctgatcccgggtaccgatatgcctgcgcagtacttc
ctgccgggtaaagcgattgtacagctggaagatggcgtacagatcagttctggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggatatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgtcgtccgaaagaaccggcaatccttgctgaaatcgca
ggtatcgtttccttcggtaaagaaaccaaaggcaaacgtcgtctggtgattacgccggtt
gatggtagtgacccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgatgtgatttccgatggtccggaagcgccgcacgacatt
ctgcgtctgcgtggcgttcatgctgtgacgcgttacattgttaacgaagttcaggatgta
taccgtctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagcgaccatcgaaagcgccggtagttccgacttcctggaaggcgaacaggtt
gaatactctcgcgtcaagatcgctaaccgcgagctggaagcgaacggcaaagtgggggct
accttctcccgcgatctgctgggtatcaccaaagcgtctctggcaaccgaatcgttcatc
tctgccgcatcgttccaggagaccacgcgtgtcctgaccgaagcagccgttgcgggtaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgattcctgccggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgccgcgggcgagcagccagca
acaccgcaggtcactgcggaagatgcatctgcaagcctggcagagctgctgaacgcaggt
ctgggcggttctgataacgagtaa

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