KEGG   Salmonella enterica subsp. enterica serovar Bovismorbificans: BN855_38340
Entry
BN855_38340       CDS       T02827                                 
Symbol
ligA2
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
senb  Salmonella enterica subsp. enterica serovar Bovismorbificans
Pathway
senb03030  DNA replication
senb03410  Base excision repair
senb03420  Nucleotide excision repair
senb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:senb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BN855_38340 (ligA2)
   03410 Base excision repair
    BN855_38340 (ligA2)
   03420 Nucleotide excision repair
    BN855_38340 (ligA2)
   03430 Mismatch repair
    BN855_38340 (ligA2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:senb03032]
    BN855_38340 (ligA2)
   03400 DNA repair and recombination proteins [BR:senb03400]
    BN855_38340 (ligA2)
Enzymes [BR:senb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BN855_38340 (ligA2)
DNA replication proteins [BR:senb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BN855_38340 (ligA2)
DNA repair and recombination proteins [BR:senb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BN855_38340 (ligA2)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BN855_38340 (ligA2)
   MMR (mismatch excision repair)
    DNA ligase
     BN855_38340 (ligA2)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BN855_38340 (ligA2)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB RNA_ligase
Other DBs
NCBI-ProteinID: CDF56015
LinkDB
Position
complement(3806011..3807696)
AA seq 561 aa
MRLWKSMAWGILLWHSQSGALCPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSV
YDQLSARLVQWQRCVGQDVSSTPVSPPLNGTTMHPVAHTGVRKLADRQAVEQWMRGRSEL
WVQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQSTQGALANAVLQG
EIFLQREGHIQQRMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPERLSQL
AKAGFSLTKKYSLVVKDASEVERARQSWLTSALPFVTDGVVIRMAKEPASQYWRPGQGDW
LAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIGSVKRWEAWDI
APGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPDSHFNSLTCFYASATCQEQFISRLIW
LGSRSALGLDGMGEASWRALHQTHRFEHIFSWLTLTSAQIANTPGFAKGKSEQIWRQFNL
ARRQPFTRWIMAMDIPLTQAALQASGDRSWEQLLMRTEQHWRQLPATGERRAGRVIDWRN
NLQIKALSRWLAAQHIPGFGS
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgagattatggaaaagtatggcgtggggaattttattgtggcattcgcagagtggggcg
ctttgcccggcctggccgccagcaagggccgctgaagaaatcacccgtttacagcaacag
ctcgctgactggaatgacatctactggaaacaaggggttagcgcggttgacgatagtgtg
tacgaccaactcagcgcaaggctggttcagtggcaacgctgtgttggtcaggatgtttca
tctactccggtttcaccgccgttaaacggtacaacaatgcaccctgttgcgcacacgggc
gtacgtaaactcgcggaccgacaggcggtagaacagtggatgcgcgggcgcagcgagctt
tgggtacaaccaaaagtggatggtgtagcggtaacgctggtttatcaaaacggtaaactg
gccagggctatcagccggggtaacggactacaaggcgaggactggacgccaaaaattcgc
ctgatcccctctataccgcagtcaacacaaggcgcgcttgctaacgcggtgttgcagggc
gaaatctttctacagcgcgagggacatatccagcaacggatgggcgggatgaatgcgcgc
tcgaaagtcgcaggaatgttaatgcgccaggataacgcctccgcgctaaattcgttgggt
atttttatttgggcgtggccggacggtccggcaaatatgcccgaaagattaagccaactt
gctaaggctggattcagtctgacgaagaaatattccctggtggtaaaagatgccagcgag
gtcgagcgggcgcgccagtcatggctgacgtcagcgttgccctttgtgacggatggcgta
gtgatacgcatggctaaagagcccgcgtcacaatactggcgacccgggcagggcgactgg
ctggcagcatggaaatatccgccagtagcgcaggtcgcgcaagtgagcgctattcagttc
tcggtggggaaaagcggcaaaattaccgtagtagcgtcgcttgtccccgttatattggat
gataagcgggttcagcgggtcaatatcggttctgtgaaacgttgggaagcgtgggatatc
gcgccgggcgatcagatcctggtgagtctggcggggcaaggcattccccggcttgatgag
gtcgtctggcggagtcgtgaacggagtaagcctgtgccgcctgatagccatttcaactcg
ctgacctgcttttacgcgtcggcaacgtgtcaggaacagtttatctccaggctgatatgg
ctggggtcacggtcggcgttgggtctggacggaatgggtgaagccagctggcgggccttg
catcagacgcatcgctttgagcatatcttctcctggcttaccctgacgtcagcgcaaata
gccaacacgccaggctttgctaaaggaaaaagcgagcagatatggcggcaatttaacctg
gcgcgccggcagccgtttacccgctggatcatggcgatggatatccccttaacgcaggcc
gcattacaggccagcggcgatcgttcatgggagcagttattaatgcgaacagagcaacac
tggcggcagttaccagcgacgggcgagcgtcgtgccgggagagtcatcgactggcggaat
aatctgcagatcaaagcgctgagcagatggctggctgctcagcatattcccggatttggg
tcttag

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