Staphylococcus epidermidis SEI: DP17_1862
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Entry
DP17_1862 CDS
T03343
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
seps
Staphylococcus epidermidis SEI
Pathway
seps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DP17_1862 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seps03019
]
DP17_1862 (rnr)
03016 Transfer RNA biogenesis [BR:
seps03016
]
DP17_1862 (rnr)
Enzymes [BR:
seps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DP17_1862 (rnr)
Messenger RNA biogenesis [BR:
seps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DP17_1862 (rnr)
Transfer RNA biogenesis [BR:
seps03016
]
Prokaryotic type
tRNA degradation factors
DP17_1862 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rho_RNA_bind
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AIR83181
UniProt:
A0A7U0AB33
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All DBs
Position
1964829..1967207
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AA seq
792 aa
AA seq
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MNLKQSIEEMIKQPDYEPMSVSDFQDALGLNSADSFRDLIKILVELEQSGLIERTRTDRY
QRKQSNKTNSKLIKGTLSQNKKGFAFLRPEDDEMDDIFIPPTKINRALDGDTVIVEIQKS
RGEHKGKIEGEVKSIEKHSVTQVVGTYSEAKHFGFVLPDDKRIMQDIFIPKGQNLGAVDG
HKVLVQITKYADSTDNPEGHVSAILGHKNDPGVDILSIIYQHGIEIEFPDDVLQEAEEVP
DVIEPSEIEGRRDLRDELTITIDGADAKDLDDAIAVKKLKNGNTELTVSIADVSYYVKEG
SALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPEEDRLTLSCRMEINERGEVVKHE
IFDSVIHSNYRMTYDAVNKIITDQDSEIRSQYKDLTPMLDLAQDLSNRLIRMRKRRGEID
FDINEAKVLVNDEGIPTEVLMRERGEGERLIESFMLAANETVAEHFNKLEVPFIYRVHEQ
PKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQNIQEEVEGRPEQMVISTMMLRSMQQAH
YDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIENSMDKKEIRHWEETLPELA
EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHI
ANMTDDYYHFDERQMALIGERQAKVFRIGDAVKVKVTHVDVEERMIDFQIVGMPLPKKTS
SQRPAREKTIQAKTRGKSLDHTKSDRNGKGKKKKRKQRKGKNARKKDKQGNTHHKPFYKD
KSVKKKSRRKKK
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaagcaatccatcgaagaaatgataaaacaacctgactatgaacccatgtca
gtatctgactttcaagatgcgttaggtttaaacagtgccgactcatttagagatttaatt
aaaatactcgttgaattagaacagtctggtttaattgaacgtacaagaacagacagatat
caacgtaaacaatccaacaaaacaaattcaaaactaatcaaaggaacgttaagtcaaaat
aaaaaaggctttgctttcttaagacctgaagatgacgagatggatgatatttttattcca
ccaactaaaatcaatagagcattagatggagatactgtcatcgtggaaattcaaaaatct
cgtggagaacataaaggtaaaattgaaggtgaagtaaaatctattgaaaagcattcagtt
acacaagttgttggaacgtatagcgaagcaaagcattttggtttcgtattaccggatgac
aaacgtattatgcaagatatctttatacctaaaggacaaaatttaggtgctgtagatggt
cataaagtattagtacaaattacgaagtatgccgatagtactgacaatccagaaggccac
gtttcagcaatattaggtcataaaaatgatccaggtgtagatatactttccatcatttac
cagcatggaatagaaatcgagtttccagatgatgtattacaagaagctgaagaagtaccg
gatgtaatagaaccatctgaaatcgaagggcgtcgtgatttaagagatgaattaacaatc
actatagatggcgcagatgctaaagatttagatgatgccattgctgtaaaaaaattaaaa
aatggcaacaccgagcttacagttagtattgcagatgtaagttactatgtaaaagaagga
tcagctttagataaagaagcatatgatcgtgcgacaagtgtgtatcttgtcgatcgagta
atcccgatgattccacaccgtctaagtaatggaatatgctcattaaatccggaagaagat
cgtttaacattaagttgtcgaatggaaataaatgaacgaggcgaagttgtaaaacatgaa
atctttgatagtgtaatacattcaaactacagaatgacatatgatgcagttaacaaaatt
atcactgatcaagattctgaaatacgttcacaatataaagatttaacacctatgttagat
ttagcgcaagatttatcaaatagattaattcgtatgcgcaaacgtcgtggagaaattgat
tttgatattaatgaagcgaaagtacttgtgaatgacgaaggtattccaacagaagtgcta
atgagagaacgtggcgaaggagaacgtttaattgaatcattcatgttagcagccaatgaa
acagtagctgaacacttcaataaattggaagtaccatttatttatcgtgttcatgaacaa
ccaaaatctgaccgattaagacagttcttcgactttattaccaattttggtattatgatt
aaaggtacaggtgaagatattcatccaacaacattacaaaacattcaagaagaagttgaa
ggtagaccagaacaaatggttatttcaacgatgatgttacgttctatgcaacaagcacat
tatgatgatgttaatttaggacattttggtttgtctgctgagtactatactcactttacg
tctccaatacgccgttatcctgatttaacagtgcatagattaattcgtaaatatttaata
gagaattctatggataaaaaagaaatacgtcattgggaagagacgttgccagaattagct
gagcacacatcacaacgtgaacgccgtgccattgaagccgaacgtgatactgatgaattg
aaaaaagctgagtatatgattcaacatattggtgatgaatttgaaggtatcattagctcg
gttgctaattttggtatgtttatagaattacctaatactattgagggtatggttcatatc
gctaatatgacagacgattattatcattttgatgaacgacaaatggcactaatcggtgaa
cgtcaagcaaaggtctttcgcattggtgatgcggtcaaagttaaagtgacacatgttgat
gtggaagaacgcatgatagatttccaaattgttggcatgccattacctaaaaagacatca
tcacaacgacctgctcgtgagaaaaccattcaagctaaaacacgtggcaagtcgttagac
catactaaaagtgatcgtaatggtaaaggtaaaaagaaaaaacgtaagcaacgtaaaggt
aaaaatgctcgtaaaaaagataaacaaggtaatacgcaccacaaacctttttataaagat
aaaagtgtgaagaaaaaatcacgtcgaaagaaaaaatag
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