KEGG   Staphylococcus epidermidis SEI: DP17_624
Entry
DP17_624          CDS       T03343                                 
Name
(GenBank) putative DEAD-box ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
seps  Staphylococcus epidermidis SEI
Pathway
seps03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:seps00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DP17_624
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:seps03019]
    DP17_624
   03009 Ribosome biogenesis [BR:seps03009]
    DP17_624
Enzymes [BR:seps01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     DP17_624
Messenger RNA biogenesis [BR:seps03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     DP17_624
Ribosome biogenesis [BR:seps03009]
 Prokaryotic type
  rRNA helicases
   DP17_624
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_30 CMS1 Flavi_DEAD
Other DBs
NCBI-ProteinID: AIR82444
UniProt: A0A5R1C6C1
LinkDB
Position
complement(654280..655809)
AA seq 509 aa
MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL
IEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGP
QIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTML
FSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNN
RRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQ
ELVEANDEVEVQLTFEKPLARKNRSSKGGSRRSNHKRGNGKFDNKNRRSKGSKGQSSKKK
NQKKFDRRDKQQKSGNQSLKGRTFADHQK
NT seq 1530 nt   +upstreamnt  +downstreamnt
ttgcaaaattttaaagaactagggatttcggataaaacggttcaaacactagaagcaatg
ggatttaaagaaccgacacctatccaaaaagatagcatcccttatgcgttagaaggagat
gacatccttggacaagcccaaactggtactgggaaaacaggggcgtttggtataccttta
attgagaaagttgtaggccaacagggtgttcaatcattaattcttgcgccaacgagagag
cttgctatgcaagtagctgagcaattaagagagttcagtaaaggtcaaaaagtacaagtt
gttacagtctttggtggtatgcctattgaaagacagattaaagcattaaaaagaggccct
caaattgtagtaggtacgccgggaagagttattgatcatcttaatcgtcgtacacttaaa
actcaaggaattcacacgcttattttagatgaagcagatgaaatgatgaatatgggattc
atcgatgatatgagatttattatggataaaattccagctgaacaacgtcaaactatgcta
ttttcagctacgatgccaaaagcaatccaagaattggtacagcagtttatgaaagctcct
aaaataattaagacaatgaataatgaaatgtcagatcctcaaattgatgaatattataca
atagttaaagaattagagaaatttgatacatttacaaactttttagatgttcatcagcct
gaattggcgattgtctttggtcgtactaagcgtcgcgtagatgaattaacaagcgcgcta
ttatctaaaggatacaaagcagaaggtttacatggtgatattacccaagcaaaacgttta
gaagtattgaagaaatttaagaacgatcaaatagatattttagttgctacagatgtggct
gcacgtggtcttgatatttctggtgtgagtcatgtttataattttgatatccctcaagat
acagaaagttatactcaccgtattggacgtactggtcgagcaggaaaagaaggtattgca
gttacttttgtaaatccaattgagatggattatattcgacaaattgaagatgtcaataat
cgtcgaatgaaagcattaagacctccacatcgtaaagaggtgcttaaagcgcgtgaagat
gatattaaagatagagttcaaaactggatgtcaagagaaaatgagccgcgtttacaaaga
atatcaagtgaattacttaaagaatatgatagtacagaattagtagcctctttacttcaa
gaacttgtagaagctaatgatgaagtggaagtacaattaacttttgaaaaaccattagca
cgtaaaaatcgcagtagtaaaggcggttctagaagaagtaatcataaacgtggtaatggt
aagtttgataataaaaatagacgatcaaaagggtctaaaggtcaatcaagcaaaaagaaa
aaccaaaagaaatttgaccgtagagataagcaacaaaaaagtggtaatcaatcactaaaa
ggtcgcacatttgcagatcatcaaaaataa

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