Serinicoccus hydrothermalis: SGUI_2893
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Entry
SGUI_2893 CDS
T04436
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
serj
Serinicoccus hydrothermalis
Pathway
serj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
serj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SGUI_2893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
serj03021
]
SGUI_2893
03400 DNA repair and recombination proteins [BR:
serj03400
]
SGUI_2893
Enzymes [BR:
serj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SGUI_2893
Transcription machinery [BR:
serj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SGUI_2893
DNA repair and recombination proteins [BR:
serj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SGUI_2893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ANS80289
UniProt:
A0A1B1NFU5
LinkDB
All DBs
Position
3161561..3165487
Genome browser
AA seq
1308 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAGVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEEGRHQDLPSLEAQIQTEKKALENRRDSDVETRAKKLESD
LAELEAEGAKSDAKRKVKDGAEREMNQIRRRADAQVERLEQVWDRFKNLKVQDLEGDEIL
YREMRDRFGMYFEGGMGAAALQKRLESFDLDAEAESLRETIATGKGQRKTRAIKRLKVVT
SFLQTKNEPAGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRAVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLRLHQCGLPKQMALELFKPFVMKRLVDLDHAQNIKSAKRMVERGR
SVVWDVLEEVITDHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMIIGLFHLTSESSRGEAGSA
YLVDEDGNRHLRSFGSVAEARMAFDAGQIELGSPIRLRLNQTATPEGFELPEDAQVTEDG
VVDTFVLETTLGRALFNDALPPNYAYVDDVVDKKRLSAIVNDLAERYTKVQVAASLDSLK
DAGYHWATRSGTTVAVSDVQTPERKTEILSSYEEKAAKVQLQYERGLITDDERRQELIEI
WTQATNEVAKELETSMPKDNTIYRMVTSGARGNWFQLRQIAGMRGLMANPKGEIIPRPIK
SNFREGLSVLEFFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTDRGF
VMPIAQAKAEGGLREHDDVETAVYARTLASDVEVDGEVLAQAGIDLGDVVIDKLVAAGVE
EVKVRSVLTCESLVGTCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTG
GVAGDDITQGLPRVVELFEARTPKAVAPIAEATGRIEVEDTDKTRRLLLTPDDGSDEHAY
PVSKRARLLVSDGEHVQVGTQLVVGAIDPKQVLRILGPRATQQHLVDQVQGVYRQQGVSI
HDKHIEVIVRQMLRRVTIIEAGDTELLPGTLAERGRFETENRRVVSEGGRPASGRPELMG
ITKASLATDSWLSAASFQETTRVLTEAAMEAKSDPLLGLKENVILGKLIPAGTGLTRYRN
LTVEPTEEAKAAAYAVPDYEDFDYAGTFGQGSGEAVRLDDVPMDEPRY
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgacgagctgcggatcggcctggccacggccgaagacatc
cgcacctggtcccacggcgaggtcaagaagccggagaccatcaactaccgcaccctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggcaagtacaagcgggtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgtgcgggcgtccgccgcgagcggatgggccacatcgagctcgccgcgccg
gtcacccacatctggtacttcaagggtgtgccgtcgcgtctgggctacctgctcgacctg
gcgccgaaggacctggagaaggtcatctacttcgcggcctacatgatcacctcggtcgac
gaggagggtcgccaccaggacctgcccagcctcgaggcgcagatccagaccgagaagaag
gcgctggagaaccgtcgcgactccgacgtggagacccgcgccaagaagctcgagagcgac
ctcgccgagctcgaggccgagggcgccaagtccgacgccaagcgcaaggtcaaggacggc
gccgagcgggagatgaaccagatccgccgccgggccgacgcccaggtcgagcgtctggag
caggtctgggaccggttcaagaacctcaaggtccaggacctcgagggcgacgagatcctc
taccgcgagatgcgtgaccgcttcggcatgtacttcgagggtgggatgggcgccgccgcg
ctgcagaagcggctggagagcttcgacctcgacgccgaggccgagtcgctgcgcgagacc
atcgccaccggcaagggccagcgcaagacccgtgccatcaagcgactcaaggtcgtcacc
agcttcctgcagacgaagaacgagccggccggcatggtgctcgactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgacctcggacctc
aacgacctctaccgccgcgtcatcaaccgcaacaaccgcctcaagcggctgctggacctg
ggcgcgccggagatcatcgtcaacaacgagaagcgcatgctccaggaggccgtcgacagc
ctcttcgacaacggtcgtcgtggccgcgcggtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccggcagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgcgcctccaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtcatgaagcggctg
gtcgacctggaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgtggccgc
agcgtcgtgtgggacgtgctcgaggaggtcatcaccgaccaccccgtgctgctcaaccgc
gcccccacgctgcaccgtctgggcatccaggccttcgagccgcagctggtcgagggcaag
gcgatccagatccacccgctggtctgcaccgccttcaacgccgacttcgacggtgaccag
atggcggtccacgtgccgctgtccgcggaggcccaggccgaggcccggatcctcatgctc
agctccaacaacatcctcaagccggccgacggccgtccggtgaccatgcccacccaggac
atgatcatcggcctgttccacctcacctcggagagcagccggggcgaggccggatcggca
tacctggtcgacgaggacggcaaccggcacctgcgcagcttcggctccgtcgccgaggcc
cgcatggccttcgacgccgggcagatcgagctgggcagcccgatccggctgcgcctcaac
cagaccgcgaccccggagggcttcgagctccccgaggacgcgcaggtcaccgaggacggt
gtcgtcgacaccttcgtcctggagacgacgctgggccgggcgctgttcaacgacgccctg
ccgccgaactacgcctacgtcgacgacgtggtggacaagaagcggctctcggcgatcgtc
aacgacctcgccgagcgctacaccaaggtgcaggtggcggccagcctggactcgctcaag
gacgcgggctaccactgggcgacccgctcgggcaccacggtggcggtctccgacgtgcag
acgccggagcgcaagaccgagatcctctcctcctacgaggagaaggccgccaaggtccag
ctgcagtacgagcgtggtctgatcaccgacgacgagcgccgtcaggagctcatcgagatc
tggacccaggcgaccaacgaggtcgccaaggagctcgagacctcgatgcccaaggacaac
accatctaccggatggtcacctcgggtgcgcgaggcaactggttccagctgcggcagatc
gccggtatgcgtggcctcatggccaacccgaagggcgagatcatcccgcgtccgatcaag
tccaacttccgcgagggcctgtcggtgctggagttcttcatctccacccacggcgcccgg
aagggtctggcggacaccgcgctgcggaccgccgactcgggctacctcacgcggcgtctg
gtcgacgtcagccaggacgtcatcatccgcgaggacgactgcggcaccgaccgcggcttc
gtcatgccgatcgcccaggccaaggccgagggtggtctgcgcgagcacgacgacgtcgag
accgcggtgtacgcccggaccctcgcctccgacgtggaggtcgacggggaggtgctggcg
caggccgggatcgacctcggcgacgtggtcatcgacaagctcgtggccgccggcgtcgag
gaggtcaaggtccgctcggtgctcacctgcgagtccctggtcgggacctgcgccaagtgc
tacgggcgctccctggccaccggcaagctggtcgacatcggcgaggccgtcggcatcatc
gcggcgcagtccatcggtgagcccggcacccagctgacgatgcggaccttccacaccggt
ggtgtggccggtgacgacatcacgcagggtctgccccgtgtggtcgagctcttcgaggcc
cgcacgcccaaggcggtcgccccgatcgccgaggcgaccggtcgcatcgaggtcgaggac
accgacaagacgcgtcggctgctgctcaccccggacgacggcagcgacgagcacgcctac
ccggtcagcaagcgcgcgcgcctgctggtctcggacggcgagcacgtccaggtcggcacc
cagctcgtggtcggcgcgatcgaccccaagcaggtgctgcgcatcctcggcccccgtgcc
acccagcagcacctggtcgaccaggtgcagggcgtctaccgccagcagggtgtgtcgatc
cacgacaagcacatcgaggtcatcgtgcggcagatgctgcgccgcgtcacgatcatcgag
gccggcgacaccgagctgctgccgggcaccctcgccgagcgtggccggttcgagaccgag
aaccggcgggtcgtctccgagggcggtcgcccggcctcgggtcgtcccgagctcatgggc
atcaccaaggcctcgctggcgaccgactcctggctctccgcggcctccttccaggagacc
acgcgcgtcctcaccgaggccgccatggaggccaagagcgacccgctgctgggcctcaag
gagaacgtcatcctcggcaagctgatccccgcggggaccggcctgacgcgctaccgcaac
ctcacggtggagccgaccgaggaggccaaggccgccgcgtacgccgtccccgactacgag
gacttcgactacgccggcaccttcggccaggggagcggcgaggcggtccgcctcgacgac
gtccccatggacgagccgcgttactga
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integrated database retrieval system
