Sinorhizobium fredii USDA 257: USDA257_c47790
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Entry
USDA257_c47790 CDS
T02188
Name
(GenBank) putative signaling protein
Organism
sfd
Sinorhizobium fredii USDA 257
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
MHYT
PAS_9
PAS_8
PAS
PAS_4
Motif
Other DBs
NCBI-ProteinID:
AFL53315
UniProt:
I3XBQ9
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Position
complement(4954723..4957086)
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AA seq
787 aa
AA seq
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MFSVLACISDRHDWRLVAVAAIVCLAGSAATMLLLQRAERSEGWQRHLWTAACAFACGVG
VWSTHFIAMLAYDGGVPIAYDAWGTLFSALVAVAASWIAFATALVGTSRYAFPGAGIFLG
LGIAAMHVTGMRAIETQGRIDFDPQMSFAAVLFGPLIAALALHAFRALGGAHKLVAPTLL
LVLAICVLHFTSMSGGTLVPDPSVAAADAFDPVWLAGGVVVASTTLILTALGALFIDRHL
TDLRGLANASLEGMVIVCNGRVVDANERFVSLCGAKAADLIGRKPEGLFASPQGHEPRER
QIDNGPAEVELICADGRRVPVEHVCRTIEYRGRQSDVIFVRDLSARKEAERTIEHLAHHD
GLTDLSNRSSFERRMRQAPAVAAARNEHLAVFCLDLDRFKAVNDIFGHGEGDRILRKVAD
ILRAAAGEADTIARLGGDEFAVLQTGAVQPEAARQLSDRILRLFAEEMDTHRDPMAVGVS
MGVAIYPGDGATAERLCNNADTALYRAKRSGKGIACFFDAEMDETLRSRRQMESDLRHAI
LRRQLFLEYQPLVDVHDDRVVGYEALLRWRHPERGIVGPNVFIPIAEESGSIIQIGEWVL
EQACAEAVRWADPLPVSVNISPVQFLVPSLFDQIAGILRRTGLEPRRLELELTEAALLHN
REDVLAALVRLRLLGVRIVMDDFGTGHSSLANLQTFPFDKLKIDCSFTAALDKDPAAHAI
IRAIIALGHSLNLPVVTEGVETERQKQIIVEEGCRQIQGFLTGRPGLAPSAGAISSSDAP
ALRHAEA
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgttctcagtacttgcatgcatcagcgatcgtcacgactggcgtctggttgcagtggcg
gcgatcgtctgtctggccggcagcgcggcgacgatgctgctcctgcagcgcgccgagcgc
agcgaaggctggcagcggcacctctggaccgcggcctgcgcctttgcctgcggcgtcggc
gtctggtcgacgcatttcattgcgatgctcgcctatgacggtggcgtgccgatcgcctac
gacgcctggggcacattgttttccgcgctcgttgcggtggccgcgtcctggatcgccttt
gcgacggcccttgtcggcacctcccgctatgctttccccggtgccggaattttcctcggc
ctcggcatcgccgccatgcatgtaacgggcatgcgcgccatcgagacccaggggcgaatc
gacttcgatccgcagatgagcttcgccgccgtcttattcggcccgctgatcgccgccctt
gcgctccatgcctttcgggctctcggaggcgcgcacaagctggtcgctccgacgctgctg
ctggtgcttgcaatatgcgtcctgcacttcacctcgatgagcggcggcaccctggtgccg
gacccgagcgtggcggcagcggacgcgttcgatcccgtctggctcgccggcggtgtcgtc
gtcgcctccaccacgctgatcctcaccgccttgggcgcgctcttcatcgatcggcatctg
actgacctgcgcggtctcgccaacgcatcgctcgagggaatggtgatcgtctgcaatggc
agggtcgtcgatgcgaacgaacggtttgtcagcctctgcggcgcgaaggcggccgatctt
atcggcagaaagcccgaagggctcttcgcgtcaccgcagggtcacgagccgcgcgagcgc
cagatcgacaacggtcccgccgaggtcgaactgatctgcgccgacggacgccgtgtgccg
gtcgagcacgtctgccgaacgatcgagtatcgcggccgccaatccgacgtgatcttcgtg
cgagacctcagcgcccgcaaggaggccgaaaggaccatcgagcatctggcgcatcatgac
ggcctgacggatctctccaaccgcagttccttcgagagacggatgagacaggccccagcg
gtcgcggctgcaaggaacgaacacctcgccgtcttctgcctcgacctcgatcgcttcaag
gccgtgaacgatatcttcggccatggcgagggggatcggatcctgcgcaaggttgccgat
attctccgcgccgcggcgggtgaggccgacacgatcgcgcggctaggcggcgacgaattc
gcggtcctgcagaccggtgccgtccagccggaggcggcgcggcaattgtcggaccgcatc
ctccggctctttgcggaggagatggatacccaccgcgatccgatggccgtcggcgtcagc
atgggggtggcgatctatcccggtgacggcgcgacggccgagcggctctgcaacaatgcc
gatacggcgctctaccgggccaagcggtcgggcaagggcatcgcctgcttcttcgatgcg
gaaatggacgagacactgcgctcgcgccggcagatggaaagcgatctccggcatgcgatc
cttcggcgtcagctgttcctcgaataccagccgctcgtcgacgtccatgacgaccgagtg
gtcggatacgaggcgctattgcgctggagacacccggagcgtgggatcgtcgggccgaac
gtcttcattccgatcgccgaggaaagcggctcgatcatccagatcggcgaatgggtgctc
gaacaggcctgcgccgaagcggtccgctgggcagaccctctgcccgtctcggtcaacatc
tcgccggtccagttcctcgtgccgagccttttcgatcagattgccggcatcctgcggcgc
accggcctcgagcctcgacgcctggagctggaactcaccgaagcggcgctgttgcacaac
cgggaagacgtgctggcggcgctcgtccggttgcggctgctcggcgtcaggatcgtcatg
gacgacttcggcacgggacattcgtccctcgccaacctgcagactttcccgttcgacaag
ctgaagatcgactgcagcttcaccgcggcactcgacaaggaccccgccgcgcacgcgatc
atccgcgcaatcatcgcgcttggccatagcctcaacctgccggtcgtgaccgagggtgtc
gagaccgagcggcagaagcagatcatcgtcgaggaggggtgccggcagatacagggcttc
ctcaccggccggccgggacttgcgccgagtgccggagcgatctcgtcgtcggacgccccg
gcgctccgacatgccgaggcgtag
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