Shigella flexneri 301 (serotype 2a): SF2070
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Entry
SF2070 CDS
T00097
Symbol
sbcB
Name
(RefSeq) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sfl
Shigella flexneri 301 (serotype 2a)
Pathway
sfl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SF2070 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfl03400
]
SF2070 (sbcB)
Enzymes [BR:
sfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
SF2070 (sbcB)
DNA repair and recombination proteins [BR:
sfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SF2070 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SF2070 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SF2070 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-GeneID:
1025875
NCBI-ProteinID:
NP_707903
UniProt:
A0A0H2VWD3
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All DBs
Position
2088328..2089752
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AA seq
474 aa
AA seq
DB search
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRP
GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY
DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH
DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLV
HINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD
NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY
AEQQRWLEHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacagataaacaacctaccttcctctttcacgattacgaaacctttggcacg
caccccgcgttagatcgccctgcacagttcgcagccattcgcaccgatgacgaattcaat
gtcatcggcgaacccgaagtcttttactgcaagcccgcggatgactatttaccccggcct
ggagcagtattaattaccggtattaccccgcaggaggcacgggcgaaaggagaaaacgaa
gccgcgtttgccgcccgtattcactcgctttttaccgtaccgaagacctgtattctgggc
tacaacaatgtgcgtttcgacgacgaagtcacacgcaacgttttttatcgtaatttctac
gatccttacgcctggagctggcagcatgataactcgcgctgggatttactggatgttatg
cgtgcctgttatgccctgcgcccggaaggaataaactggcctgaaaatgatgacggtcta
ccgagctttcgccttgagcatttaaccaaagcgaatggtattgaacatagcaacgcccac
gatgcgatggctgatgtgtacgccactattgcgatggcgaaactggtaaaaacgcgtcag
ccacgcctgtttgattatctctttacccatcgtaataaacacaaactgatggcgttgatt
gatgttccgcagatgaaacccctggctcacgtttccggaatgtttggggcatggcgtggc
aataccagctgggtggcaccgctggcgtggcatcctgaaaatcgcaatgccgtaattatg
gcggatttggcaggagacatttcgccattactggagctggatatcgacacattgcgcgag
cgtttatataccgcaaaagccgatcttggcgataacgccgccgttccggttaagctggtg
catatcaataaatgtccggtactggcccaggcgaatacgctacgcccggaagatgccgac
cgactgggaattaatcgtcagcattgcctcgataacctaaaaattctgcgtgaaaatccg
caagtgcgtgaaaaagtggtagcgatattcgcggaagccgaaccgtttacaccttcagat
aatgtggatgcacagctttataatggctttttcagtgacgccgatcgtgcagcaatgaaa
attgtgctggaaaccgagccgcgtaatttaccggcactggatatcacttttgttgataaa
cgaattgaaaagttgttgttcaattatcgggcacgcaacttcccggggacgctggattat
gccgagcagcaacgctggctggagcaccgccaccaggtcttcacgccagagtttttgcag
ggttatgctgatgaattgcagatgctggtacaacaatatgccgatgacaaagagaaagtg
gcgctgttaaaagcactttggcagtacgcggaagagatcgtctaa
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