KEGG   Shigella flexneri 301 (serotype 2a): SF3686
Entry
SF3686            CDS       T00097                                 
Symbol
ligB
Name
(RefSeq) NAD-dependent DNA ligase LigB
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sfl  Shigella flexneri 301 (serotype 2a)
Pathway
sfl03030  DNA replication
sfl03410  Base excision repair
sfl03420  Nucleotide excision repair
sfl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sfl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SF3686 (ligB)
   03410 Base excision repair
    SF3686 (ligB)
   03420 Nucleotide excision repair
    SF3686 (ligB)
   03430 Mismatch repair
    SF3686 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sfl03032]
    SF3686 (ligB)
   03400 DNA repair and recombination proteins [BR:sfl03400]
    SF3686 (ligB)
Enzymes [BR:sfl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SF3686 (ligB)
DNA replication proteins [BR:sfl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SF3686 (ligB)
DNA repair and recombination proteins [BR:sfl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SF3686 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SF3686 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     SF3686 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SF3686 (ligB)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB RNA_ligase
Other DBs
NCBI-GeneID: 1024283
NCBI-ProteinID: NP_709426
UniProt: Q83PM9
LinkDB
Position
complement(3789803..3791485)
AA seq 560 aa
MKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGV
YDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSDLW
VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANSTLQGE
IFLQREGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELA
TAGFTLTQRYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRGAKEPESRHWLPGQAEWL
VAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIA
PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLVWL
GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLA
RNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKEN
AQIKKLGSWLAAQQITGFEP
NT seq 1683 nt   +upstreamnt  +downstreamnt
atgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatctgtgtgggcg
gtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaacagcaa
ataaaacagtgggacgatgactactggaaggaaggaaaaagtgaggtggaagacggtgtt
tacgatcagttaagcgcccgtcttacgcagtggcaacgctgctttgtgagcgagccccgc
gacgtgatgatgccgcctttaaatggtgcggttatgcatccggttgcccatacgggtgta
cgcaaaatggcggataaaaacgcattaagtctgtggatgcgagaacgtagcgatctttgg
gtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaactgaac
aaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagttagctta
atttccgctgtgctgcaaaccgttagcgggcctttagccaacagtacgcttcagggggaa
atatttctccagcgcgaggggcatatccaacaacaaatggggggaataaatgcccgcgca
aaagttgctggcctgatgatgcgccaggggaatagcgacacgctaaactcactggctgtt
tttgtctgggcatggccggatggaccgcagttaatgaccgatcgtttaaaggagctggct
accgcaggttttactctaacgcagaggtatacccgtgcggttaaaaatgctgatgaggtt
gcgcgcgtacgcaatgagtggtggaaagcgaaattacccttcgtcaccgatggcgtggtt
gtgcgaggggctaaggaacccgaatcccgtcattggctaccgggccaggcggagtggctg
gtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcagtttgcg
gtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacctgtcatgctggatgat
aaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggatattgcg
cctggtgatcagatcctcgtcagccttgccggtcagggtattcctcgcattgatgatgtg
gtctggcgcggtgcagaacgtacaaaaccgacaccaccagaaaaccgctttaacccgttg
acctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtctggctg
gggtcaaaacaggttctggggctggatggcattggtgaggccggttggcgcgcgctgcat
cagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaattacag
aacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcatcagtttaatctggct
cgtaaccagccttttactcgctgggtgatggcaatgggaataccgctaacccgggcggcg
cttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggagcagttctgg
cagcagctgccggggactggatctgggcgcgccagacaggttattgaatggaaggaaaat
gcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggttttgaacct
tag

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