Shigella flexneri 301 (serotype 2a): SF3686
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Entry
SF3686 CDS
T00097
Symbol
ligB
Name
(RefSeq) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfl
Shigella flexneri 301 (serotype 2a)
Pathway
sfl03030
DNA replication
sfl03410
Base excision repair
sfl03420
Nucleotide excision repair
sfl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SF3686 (ligB)
03410 Base excision repair
SF3686 (ligB)
03420 Nucleotide excision repair
SF3686 (ligB)
03430 Mismatch repair
SF3686 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfl03032
]
SF3686 (ligB)
03400 DNA repair and recombination proteins [BR:
sfl03400
]
SF3686 (ligB)
Enzymes [BR:
sfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SF3686 (ligB)
DNA replication proteins [BR:
sfl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SF3686 (ligB)
DNA repair and recombination proteins [BR:
sfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SF3686 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SF3686 (ligB)
MMR (mismatch excision repair)
DNA ligase
SF3686 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SF3686 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
1024283
NCBI-ProteinID:
NP_709426
UniProt:
Q83PM9
LinkDB
All DBs
Position
complement(3789803..3791485)
Genome browser
AA seq
560 aa
AA seq
DB search
MKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGV
YDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSDLW
VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANSTLQGE
IFLQREGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKELA
TAGFTLTQRYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRGAKEPESRHWLPGQAEWL
VAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIA
PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLVWL
GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLA
RNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKEN
AQIKKLGSWLAAQQITGFEP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatctgtgtgggcg
gtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaacagcaa
ataaaacagtgggacgatgactactggaaggaaggaaaaagtgaggtggaagacggtgtt
tacgatcagttaagcgcccgtcttacgcagtggcaacgctgctttgtgagcgagccccgc
gacgtgatgatgccgcctttaaatggtgcggttatgcatccggttgcccatacgggtgta
cgcaaaatggcggataaaaacgcattaagtctgtggatgcgagaacgtagcgatctttgg
gtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaactgaac
aaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagttagctta
atttccgctgtgctgcaaaccgttagcgggcctttagccaacagtacgcttcagggggaa
atatttctccagcgcgaggggcatatccaacaacaaatggggggaataaatgcccgcgca
aaagttgctggcctgatgatgcgccaggggaatagcgacacgctaaactcactggctgtt
tttgtctgggcatggccggatggaccgcagttaatgaccgatcgtttaaaggagctggct
accgcaggttttactctaacgcagaggtatacccgtgcggttaaaaatgctgatgaggtt
gcgcgcgtacgcaatgagtggtggaaagcgaaattacccttcgtcaccgatggcgtggtt
gtgcgaggggctaaggaacccgaatcccgtcattggctaccgggccaggcggagtggctg
gtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcagtttgcg
gtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacctgtcatgctggatgat
aaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggatattgcg
cctggtgatcagatcctcgtcagccttgccggtcagggtattcctcgcattgatgatgtg
gtctggcgcggtgcagaacgtacaaaaccgacaccaccagaaaaccgctttaacccgttg
acctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtctggctg
gggtcaaaacaggttctggggctggatggcattggtgaggccggttggcgcgcgctgcat
cagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaattacag
aacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcatcagtttaatctggct
cgtaaccagccttttactcgctgggtgatggcaatgggaataccgctaacccgggcggcg
cttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggagcagttctgg
cagcagctgccggggactggatctgggcgcgccagacaggttattgaatggaaggaaaat
gcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggttttgaacct
tag
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