Shewanella halifaxensis: Shal_1077
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Entry
Shal_1077 CDS
T00654
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
shl
Shewanella halifaxensis
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shl03021
]
Shal_1077
Transcription machinery [BR:
shl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Shal_1077
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_23
Phage_antitermQ
HTH_16
HTH_20
Motif
Other DBs
NCBI-ProteinID:
ABZ75646
UniProt:
B0TIV1
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Position
1316312..1316890
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AA seq
192 aa
AA seq
DB search
MSGQISDQQLVERVQRGDKNAFNLLVQKYQNKVANLISRYVRNQADVADVSQEAFIKAYR
ALPNFRGESAFYTWLYRIAVNTAKNHLVAQGRRAPANDVDAEEAEYYDGSDALKEFASPE
RLVLSEEIQKVVFDTLDTLPEELKMAISLRELDGMSYEEIANVMDCPVGTVRSRIFRARE
AIDKKLKPLLER
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgagtggacaaataagtgatcaacagttagttgagcgcgtacagcgtggagacaaaaac
gcttttaaccttttggtacagaaatatcaaaacaaggtcgcgaatctgatatctcgttac
gtacgaaatcaggccgacgttgccgatgtttcgcaggaagcttttattaaagcttaccga
gcgctaccaaactttcgtggtgaaagtgcgttttatacttggttgtaccgtattgcagtg
aatactgcgaaaaatcatctggtcgctcagggacgtcgtgccccggcgaatgatgtcgat
gctgaagaagctgaatattatgatggcagtgatgcgttaaaggagtttgcctccccagag
cgtctcgttttgtcagaagaaattcaaaaggttgttttcgacaccttagacacactgcca
gaagaattgaagatggctatttctttacgagagctcgatggtatgagttatgaagagatt
gccaatgtcatggattgccccgtcggcactgtaagatcacggatcttcagagcgcgagag
gcaatcgataaaaagcttaagccgttgctagaacgttag
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