Shewanella halifaxensis: Shal_1857
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Entry
Shal_1857 CDS
T00654
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
shl
Shewanella halifaxensis
Pathway
shl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Shal_1857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shl03400
]
Shal_1857
Enzymes [BR:
shl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Shal_1857
DNA repair and recombination proteins [BR:
shl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shal_1857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Gal4_dimer
Motif
Other DBs
NCBI-ProteinID:
ABZ76422
UniProt:
B0TRK4
LinkDB
All DBs
Position
complement(2224949..2228722)
Genome browser
AA seq
1257 aa
AA seq
DB search
MLYLVQSNQMEALSQLLASELRTPLPDTPLLMPEHILVQSPGMSTWLRLEIARQNNIAAG
LEFPLPSSFIWQLCHTLLDDVPKENAFTKAAMTWKLMELLPTLIDREDFLPLANYLNNGN
GEPSANDVASNSDVTSNSHDVSAETANAVSVEPEQNPLKLYQLCGQIADIFDQYLVYRPD
WIAAWEANEPRLPPKGDKLSPAQAWQPILWRALIDFNANRLNKSRYHRANLHQSLFDALD
DPNTSLDALPRRLFVFGISSMAPQTLDVLHYLAKRIDVIMLNLSPCQHYWGDIVDPRLRA
RMALQYADKQKLEVEWEDKLEVGNPLLANNGKMGRELLDLLLELPEEHTAFNFDCYQEPS
TDTMLSGVQYDILELSTRGQSLGPDAALYLSLDGRRVFEPSDNSITVRSCHSPLREVETL
HDHLLEMLSRPISDEQLADQVTPLAPKDIVIMMPDVAAYAPYIDAVFGAKQGSHFIPYAI
ADRGAAQESPLISSFLHLLKINQSRFGLTDILSILEVPAVLRRFELDDDGLAVIKRWLEQ
AGVRWGRDETSRTEYQLPAFEQNSWAFGIKRLILGYSFSDDSPLYQHSLSVNGVEGQTAQ
SLGKLLDFIEALDDVHQSLGQVCSLNERMAQLESILENFYEVDDDEMVQQQEIRDAIVKL
NEELTEAGHTTPLTIEVLQNWFNSRLSESRVGQRYLAGSVNFCTLMPMRSIPFKLVCLLG
MNDGVYPRVQHPVGFDLVAQMGPRKGDRSRRLDDRYLFLEAILSAREQLYISYIGNSERD
DSERIPSMLVSELIEYCQLVYLPKSLEGEQTSAEQASPALIDDIEKRIRAHLIHKQPLQP
FDNRLYTAPESVASRGQSPSAEQLSGQVQQSYSAQWCPAPIKPIDSLSAKAQSHYKYFIG
ESTQLLPFSDETSLDNSELELSALIRFFRNPAQYFFNRTLKVDLGLDIQADDNDEPFSLN
ALERYKLQAILLDNAIESGEQQPAAELLERLKAQGNLPLKPFDDLILNQYLHDITPLIGR
SLYLKGEHAQSVNIDLLFDELGLHLVGRIDDLSAKGLVNYRPGTANGRDLIRVYLRHLCL
CAMQQPELKQELKQELNTENNQALNRHTPITSYLLDIGHFHAFAPITAEQAKAQLSQWLS
CFKQGQAHPLMFMPRTALAYVEAEGSHRQKLLEAQSLWLDEQSQLGEGLEPHFQRLFSFP
EDFTEETFAATVNTLLSPLLSLYYKDKLSELATFVESGNDTVDLQKASSQTSQSEAN
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgctatatctagtccaatctaaccaaatggaagcactgtcacagctgctagccagcgag
ctgcgtacaccattacctgatacccctttgttgatgcctgagcatattttggtacagagc
ccaggtatgtctacatggttgagactcgaaatagccaggcaaaataatattgcggcaggg
cttgagtttccattgccatcaagctttatctggcagctatgccataccttgctcgatgat
gtgcccaaggagaacgccttcaccaaagcggcaatgacttggaaactgatggagctgctg
ccaacacttatcgaccgagaagattttttacctctggcaaattacctcaataatggtaat
ggtgagccgagtgccaatgatgtggccagtaacagtgatgtgaccagtaacagtcacgat
gtgagtgcagaaaccgccaacgcagttagtgttgagccagagcaaaacccacttaagtta
tatcaactctgtggtcaaattgccgacatcttcgaccaatatttagtttatcgccccgat
tggatagcagcatgggaagcgaatgagccaagattaccaccaaagggtgacaaactcagc
ccagctcaagcttggcaacccattctatggcgagcgcttatcgactttaatgctaatcgc
ttaaacaagagccgatatcaccgtgccaacctacaccaatcactgtttgatgcattggat
gaccccaataccagtttagatgccctgcctagacggctatttgtttttgggatctcgtcg
atggcgccgcagactctcgacgtactccactatctagccaaacgcatcgatgtgatcatg
cttaacctcagtccgtgtcagcactattggggggatattgtcgacccgcgcctgcgcgca
cgtatggcactacagtacgccgataaacaaaagctagaagtggagtgggaagataagctt
gaggtcggtaacccgctcttggctaataatggcaaaatggggcgtgaattactcgactta
ctgttagagctgccagaagaacatactgcattcaattttgactgctatcaagagccgagc
accgacactatgctcagcggtgtgcaatacgatatcctcgagttaagcacccgtggccag
agtcttggtcccgatgccgcgctttatttaagcttagatggcaggcgcgttttcgaacca
agtgataactccattaccgtgcgaagctgccacagcccactcagagaagtcgaaacgctg
catgatcacttgcttgagatgttatctcgtcctatttctgatgaacaacttgcagaccag
gttacaccgctggccccaaaagatatcgtgatcatgatgcccgatgtcgcggcctacgcg
ccttacatcgatgctgtatttggcgctaaacaaggtagccactttatcccttatgcgata
gcggatcgcggcgctgcgcaagaatcgccactgatctcaagctttttgcacttactaaaa
attaaccagagccgttttggacttaccgatattctcagcattttagaagtgcctgctgtg
ctgcgtcgctttgagctagacgatgacggactggcagtgattaaacgctggctagaacaa
gcgggcgtgcgctggggccgcgatgaaaccagtcgcaccgaatatcagttgccagcattc
gagcaaaactcatgggcttttggcataaaacgcttgatcttaggttatagcttcagtgat
gactcgccgctctatcaacacagcttatcggttaatggtgttgagggacaaacagcccag
tcgctaggaaaattactcgactttatcgaagcgctcgatgatgtgcaccaatcgcttggc
caagtatgtagcttaaatgagcgtatggcgcagctagagtccatactcgaaaacttctat
gaggttgatgacgatgaaatggtacaacagcaagagatccgcgatgccatcgttaaactc
aatgaagagttaaccgaagcgggacatacaacgccattaaccatcgaagtattacagaac
tggtttaatagtcgtctgtctgaatctcgcgtaggtcagcgctatcttgccggaagcgtc
aatttctgtaccttgatgccaatgcgctcaattccgtttaaattggtatgcttactcggc
atgaacgatggcgtctacccacgagtacagcatccggttggtttcgatctggtagcgcaa
atgggaccaagaaaaggtgaccgttctcgtcgattagatgatcggtatctatttttagaa
gccattttatcggcgcgcgagcagctttacatcagctatattggtaacagcgagcgtgat
gactcagagcggatcccctcgatgttggtctctgaattaatagagtactgccaactggtt
tacctgcctaagagtttagaaggcgagcaaacatcagcggagcaagcatcccccgcctta
atcgatgatattgagaaacggatccgtgcgcatctgattcacaagcagccactgcagccg
tttgataaccgactctatactgcgccagagtctgtggctagtcgcggacaaagccctagt
gctgaacagctaagcggacaagtccagcaaagctactcggctcagtggtgcccggctcct
atcaagccgatagatagcctgtcagcgaaagcgcaaagtcactacaaatatttcattggt
gaaagtacgcagctgctaccatttagcgatgaaacgagcttggataacagcgaacttgag
ctgtcggcgctgatccgcttttttagaaatccggcgcaatatttctttaaccgcacctta
aaggtcgaccttgggcttgatattcaagccgatgataatgacgagccttttagcttaaac
gccctcgaacgctacaagctgcaagccatactgttagacaatgccatcgaaagtggtgag
cagcagcccgctgctgaattgttagagcgcttgaaagctcaaggcaacttaccgttaaag
ccctttgacgacctgatcttaaatcaatacttacatgatattacgccattaattggacga
agcttatacctaaaaggtgaacatgctcaatcggtcaatatcgatctattatttgatgag
cttggattacatctggttggccgtattgatgatttaagtgcaaaaggcttagtgaactac
cgaccgggcaccgccaatggccgcgacttaattcgcgtctatttaaggcacctttgcctt
tgtgccatgcagcagccagaacttaaacaagagcttaaacaagaactaaatacagaaaat
aatcaagcgctaaacagacacacgccaataaccagttatctactcgatattggccatttt
catgcgtttgctcccatcactgccgagcaagcaaaagcgcagttgagtcaatggttaagc
tgcttcaagcaaggccaagcacatccgctgatgtttatgccgcgtacagcgctggcctac
gtagaagctgaaggtagccacagacagaaactactcgaagcgcagtctctatggttagat
gagcagagtcagttaggtgaaggcttagagccccacttccagcgtttatttagcttccca
gaagactttactgaagagacattcgcagcaacggtaaatacgctactttcgccgttactg
agcttgtattacaaagataaactcagtgagttagccacttttgttgagtcgggtaacgac
acggtagatttacaaaaagcctcttcgcaaactagtcaaagcgaggcgaactaa
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