Shewanella sp. ANA-3: Shewana3_2245
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Entry
Shewana3_2245 CDS
T00428
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
shn
Shewanella sp. ANA-3
Pathway
shn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Shewana3_2245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shn03400
]
Shewana3_2245
Enzymes [BR:
shn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Shewana3_2245
DNA repair and recombination proteins [BR:
shn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shewana3_2245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ABK48474
UniProt:
A0KXF5
LinkDB
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Position
2700260..2703964
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AA seq
1234 aa
AA seq
DB search
MLKLIQSNQMEVLCAHLAAYLRQPLPGAGLLQSEHILVQSPGMSTWLRLEIAKQNGIAAA
LEFPLPSSFIWQLCHDLLPNVPKENAFTKAAMTWKLMQLLPRLLDEPSFGPLRHYLGHTI
DNLESSAADTHSNHQLGAISADDIKLYQLCGRIADIFDQYLVYRPDWIAAWEANEPLESL
KLNEEQSWQPILWRALIAYNRDELRQSHYHRANLHQDLIAALGDSANSLAKLPQRLFVFG
ISSMAPQTIDVLHQLASRIDVIILSLSPCQHYWGDIIDPRHRARMALQYAGKRQLAEQWE
DKLEVGNPLLANNGKMGRELLDMLLELPPEHCDFGDDVYCEPCGDPNDPHTNASMLAGVQ
YDILEMQTLDRVLGPDAELYQEVANRRVLTADDDSILIKSCHSPLREVETLHDHLLDLLD
SDNQLTPKDIVVMMPDVAAYAPYIDAVFAAKQGLEYIPYAIADRGAAQESPLINSFLNLL
NINQSRFGLTDILSILEVPAILRRFQLEEDELPLIRRWLDEAGVRWGRDEQSRLKQGVPA
FEQNSWAFGIKRLILGYALRDDAPLYQSSPQGMHYLTVAGVEGQSAQALGKLLNFIEVLD
ETTQVLAKAQAPSLRLLELTELLNAFYAPDEDEREQLQEIRDAIAALEQELLAASPADMG
AQANDLDLSIEVLALWFNQRLTESRVGQRYLAGSVNFCTLMPMRSIPFKVVCLLGMNDGV
YPRVQHPVGFDLMAHLGARKGDRSRRLDDRYLYLEALLSAREQLYISYIGRSERDNSERI
PSMLVSELIEYCQLCYLPESLAAEASNVSNEVAQQALLEAIVSHQPLQPFDPKLYQAALP
QALTSHGIKQSYSQQWCPPDSNSQLQHGRFIEAHTQIVLEDDAIGDSVQDIEPLGEAEHV
DISAFIRFFRNPAQYFFNRTLKVDLNLNIQADDNDEPFSLNALERYLLQAQLLGDALEQG
QNEPSTELLQRLKASGNLPMQPFDDLLLRQYSHDIAPLIGRTLFMRGDVAPRHADIRLSF
ELPHQNSGTQLKAKRVILEGRIDDISPKGLVTCRPGSAHGRDILALYLRHLCLMAAGVAQ
PSYLQPSYLLDMGHFHALAPITPALAHAQLANLLKYFYQGQIHPLCFMPRTSLAYASAEA
HEAQDSHTSTDPHKARLEAAQSEWLDEQGELGEGTDPHYQRLFHFPDDFTEAHFGKLADD
IYRPMLSLYHKDTLAQLEEFALNEAQTATTEGAH
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagttaatccaatccaatcaaatggaagtgctctgtgcccatcttgccgcgtat
ttgcgccagccgctacccggcgcggggttattgcaaagtgagcatattttggtgcaaagc
cccgggatgtcgacttggttacgccttgaaattgcaaaacaaaatggtattgccgccgcg
ctggagttcccactaccttccagctttatttggcaactgtgccacgatttactccccaat
gtccccaaggaaaacgccttcactaaggcggctatgacctggaagctgatgcaactactg
ccgcggctactggatgaaccttcttttgggccactgcgccattatttgggccataccata
gataatctggaatcgagcgcggctgacacccatagcaaccatcagcttggcgccataagc
gccgatgatattaagctttaccagctctgcggccgcatcgccgatatcttcgaccagtat
ttagtttaccgccccgactggattgccgcgtgggaagctaatgagccgctcgaatcgctc
aaattgaatgaggagcaaagctggcaacccatcctctggcgcgcgctgattgcctacaat
cgcgatgagctgcgtcaaagccactaccatagggccaatctgcatcaggatttgattgcc
gcattgggggatagcgccaattccctcgcaaaattgccgcaacgtttatttgtgtttggg
atctcctccatggcgccccaaaccatcgatgtgctccaccagctcgcgagccgcatcgat
gtgattatcttaagccttagcccctgtcagcattactggggcgacattatcgacccacgc
catcgggcgcgtatggcattgcaatatgcaggaaaacgccaattagctgagcaatgggaa
gataaactcgaagtcggcaatcccctgctcgccaacaatggcaagatgggccgcgaatta
ctcgatatgctgctcgaactgcccccagagcactgtgactttggcgacgatgtgtactgc
gagccctgcggcgatcctaacgatccccacactaacgcaagtatgctggctggtgtgcaa
tacgatattttagaaatgcagacactcgatcgggtactcgggccggatgctgagctatat
caagaggtcgcgaatcgccgggtattaacagccgacgatgattcgattctaatcaagagt
tgccacagcccgcttagggaagtcgaaaccctgcacgatcatttactcgacctgctggat
agcgacaaccaactcacccccaaagacatagtggtaatgatgccggatgtcgccgcctac
gccccctatatcgatgcggtgtttgcggccaaacagggactggaatatatcccctatgcc
attgccgaccgcggcgcggcgcaggaatcgccactcattaatagctttttgaatttactc
aatattaatcagagccgtttcggactgacggatattttaagcattctcgaagtcccagcc
attttgcgacgttttcagctcgaagaagacgagctgccactcattcgccgctggttagat
gaagcaggtgtgcgttggggccgcgatgaacagagccgccttaaacagggtgtgcccgcc
ttcgagcaaaactcctgggcctttggcataaaacgcttaatcttaggctatgccttaagg
gacgatgcgccgctatatcagtcatccccgcagggaatgcactatttaacggtggctggg
gtggagggtcaatcggcacaggcccttggcaaactgttgaattttattgaagtcctcgat
gagaccacccaagtattagccaaggcgcaagcgccctcactgcggttactcgaactcacc
gagctgttaaacgccttttacgcccccgatgaggacgaacgagagcagctgcaggaaatt
cgcgatgcgattgccgccttagagcaagagctacttgccgccagccctgccgatatgggt
gcacaagccaacgacttagatttaagcatcgaagtgctggcgctttggtttaatcaacgc
ttaaccgagtcacgtgtcggccaacgatacctcgcgggcagcgtaaatttttgtacctta
atgccgatgcgctcgattcccttcaaggtggtttgtctgctggggatgaatgatggtgtc
tatcctagggtgcaacatcctgtgggctttgatctgatggcccatttgggtgcgcgcaaa
ggcgatcgttcccgtagattagatgatagatacctgtatttagaggcgttactctcggct
cgggagcagctgtacatcagttatattggccgtagcgaacgggataactcggagcgtatt
ccatctatgctggtctccgagctaatagaatattgccagctatgttatttacctgaatcc
cttgcagcagaagcttctaatgtcagtaacgaagtcgcccaacaggcattgcttgaggcc
attgtgagccatcagccgctgcaaccttttgatcctaaactgtatcaagcagcactgccg
caagccctcacctcccatgggataaaacagagttatagccagcagtggtgtccgcccgat
agcaatagccagttgcaacatggccgatttatcgaagcccatacccagatagtgctcgaa
gatgacgcaattggtgatagtgttcaggatattgagccgcttggcgaagcagagcatgtg
gatatctcggcctttattcgcttctttcgcaatcccgcgcagtatttctttaatcgtacc
ctgaaagtcgatttaaaccttaatattcaagcagatgataacgatgagccctttagtctt
aatgcgttagagcgttatttattacaggctcagctccttggcgatgcgcttgagcaagga
caaaacgagcccagcactgaactgttacaacgccttaaagccagcggtaacttgcctatg
cagccctttgatgatctgctactgcgccaatacagccatgatatcgcgccgctgatcggt
agaaccctgtttatgcgcggcgatgtcgctccccggcatgccgatattcggctcagcttt
gagttaccccatcagaactctggaactcagttaaaagccaagcgggtgatcctcgaaggt
cgaatcgatgatatcagccctaaaggattggtcacttgccgccccggcagtgcccatggg
cgggacattttagccttgtatttacgtcatttatgtttgatggccgccggagtggctcaa
cctagctacctgcaacctagctatctgctggatatggggcattttcatgccctcgcgccc
attacgccagcgcttgcccatgcgcagcttgccaacttattaaagtatttttatcagggc
caaattcatcccctgtgctttatgccaagaacctccctcgcctatgccagcgctgaggcg
catgaagcgcaagactcgcacacaagcacagacccgcacaaagcacggctcgaagcggcg
cagagcgaatggctggacgagcaaggtgaacttggcgaaggcacagatccccattatcag
cggctgtttcattttcccgacgactttaccgaggcacattttggcaagctcgccgatgac
atctatcggccaatgcttagcctgtatcacaaggataccctcgcccaactcgaggaattt
gccctgaatgaagcccaaaccgccacgacagagggagcgcactga
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