Shigella sp. PAMC 28760: A0259_00365
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Entry
A0259_00365 CDS
T04390
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
shq
Shigella sp. PAMC 28760
Pathway
shq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0259_00365 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shq03021
]
A0259_00365 (rho)
03019 Messenger RNA biogenesis [BR:
shq03019
]
A0259_00365 (rho)
Transcription machinery [BR:
shq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A0259_00365 (rho)
Messenger RNA biogenesis [BR:
shq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A0259_00365 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
AAA
OB_RNB
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AMR21204
LinkDB
All DBs
Position
77056..78315
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSLSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaaat
atggggctggaaaacctggctcgtatgcgtaagcaggacattatttttgccatcctgaag
cagcacgcaaagagtggcgaagatatctttggtgatggcgtactggagatattgcaggat
ggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctac
gtttcccttagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaag
attcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaac
ttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcac
gcaaactctcgtctgcgtatggaacgtggtaacggttctactgaagatttaactgctcgc
gtactggatctggcatcacctatcggtcgtggtcagcgtggtctgattgtggcaccgccg
aaagccggtaaaaccatgctgctgcagaacattgctcagagcattgcttacaaccacccg
gattgtgtgctgatggttctgctgatcgacgaacgtccggaagaagtaaccgagatgcag
cgtctggtaaaaggtgaagttgttgcttctacctttgacgaacccgcatctcgccacgtt
caggttgcggaaatggtgatcgagaaggccaaacgcctggttgagcacaagaaagacgtt
atcattctgctcgactccatcactcgtctggcgcgcgcttacaacaccgttgttccggcg
tcaggtaaagtgttgaccggtggtgtggatgccaacgccctgcatcgtccgaaacgcttc
tttggtgcggcgcgtaacgtggaagagggcggcagcctgaccattatcgcgacggcgctt
atcgataccggttctaaaatggacgaagttatctacgaagagtttaaaggtacaggcaac
atggaactgcacctctctcgtaagatcgctgaaaaacgcgtcttcccggctatcgactac
aaccgttctggtacccgtaaagaagagctgctcacgactcaggaagaactgcagaaaatg
tggatcctgcgcaaaatcattcacccgatgggcgaaatcgatgcaatggaattcctcatt
aataaactggcaatgaccaagaccaatgacgatttcttcgaaatgatgaaacgctcataa
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