KEGG   Sarcophilus harrisii (Tasmanian devil): 100914787
Entry
100914787         CDS       T02286                                 
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X2
  KO
K12878  THO complex subunit 1
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03013  Nucleocytoplasmic transport
shr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:shr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100914787 (THOC1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100914787 (THOC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shr03019]
    100914787 (THOC1)
   03041 Spliceosome [BR:shr03041]
    100914787 (THOC1)
Messenger RNA biogenesis [BR:shr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     100914787 (THOC1)
Spliceosome [BR:shr03041]
 Complex C
  Other components
   EJC/TREX
    100914787 (THOC1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100914787 (THOC1)
SSDB
Motif
Pfam: efThoc1 Death
Other DBs
NCBI-GeneID: 100914787
NCBI-ProteinID: XP_003760061
Ensembl: ENSSHAG00000014829
UniProt: G3WPU7
LinkDB
Position
1:complement(494343016..494394966)
AA seq 658 aa
MSPSPPLFSLPEARTRFTNSTRDALINKNIKPLLSTFSQLAGSENEKKCTLDQAFRVILE
EEIITRASCENVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
ATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLENVTVFNTNEQESTLGQKHIEDRDEGMEVEEGEMGDDEAPTSCSIPIDYNLYRKFWS
LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERPSDSKPTRVVRKRTAPE
DFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSESREYMPTLEEFFEEAIEQADPENMV
ENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
KTGEDEDEEDNDALLKENNESPDVRLDKPVTGDQIDLYANKLGEQWKILAPYLEMKDSDI
RQIESDSEDVKMRAKQLLVAWQDQEGIHATPENLINALNKSGLSDLAESLTNDTETSS
NT seq 1977 nt   +upstreamnt  +downstreamnt
atgtctccgtcgccgcctctcttcagtttgcccgaagcgcggacccggtttacgaattct
accagagacgccttgatcaacaaaaatatcaagccattattgagcaccttcagccaatta
gctggcagtgaaaatgagaaaaaatgtacccttgatcaagctttcagagttattctagag
gaggaaattataacccgtgcatcatgtgaaaatgttttggctattatttctcttgctatt
gggggagtcactgaaggtatttgtacagcatctacaccttttgtactattgggagatgtt
ttggattgtcttcctttggatcaatgtgacacaatcttcacctttgtggagaaaaatgtt
gccacttggaaatcaaatacattctattctgctggaaaaaactatttgttgcgtatgtgc
aatgatctccttagaagattatcaaagtcccagaatactgtgttctgtggaaggattcag
cttttcttggccagactttttccattgtcagagaaatcaggtcttaacttacaaagtcag
tttaatcttgaaaatgtcactgttttcaacacaaatgaacaagagagcactttgggtcag
aagcacattgaagatagagatgaaggaatggaagtagaggaaggagaaatgggagatgat
gaagcgccaacaagttgttccattccaattgattacaacttgtatagaaaattctggtca
cttcaggattacttcagaaatcctgtgcagtgctatgagaagatttcatggaaaactttt
ctcaagtattctgaggaggttttagctgtttttaaaagttataaactggatgatactcag
gcctcaagaaagaagttagaagaattgaaaactggaggagaacatgtatattttgcaaaa
tttttaacaagtgaaaagcttatggatctacaactgagtgatagtaactttcgccgtcac
atccttctgcagtatctcattttatttcaatacctcaaggggcaagtaaaattcaaaagt
tcaaactatgttctaactgatgagcaatccctgtggattgaagatactacaaaatcagtc
tatcaactactatctgaaaacccccctgatggagagagattttcaaaaatggtagagcat
atattaaacacagaagaaaattggaactcatggaaaaatgaaggctgcccaagttttgtg
aaagaaagaccttcagactccaagcctacaagagtcgtaaggaaaagaacagcaccggag
gatttcctggggaaaggacccaacaaaaaaattctgatgggaaatgaagaattaacaagg
ctttggaatctctgtcctgataatatggaagcttgtaaatcggagtccagggaatacatg
ccaactttggaagaattttttgaagaagccattgagcaggcagatccagagaatatggtt
gaaaatgaatataaggctgtgaataactccaattatggatggagagctctgaggctgtta
gcacgtcgtagtccacacttcttccaaccaaccaaccagcagtttaaaagtttgccagaa
tatctagaaaatatggttataaaactagccaaggagttgccacctccttctgaagaaata
aaaacaggtgaagatgaagatgaggaagataatgatgctttattgaaggaaaataatgag
agtcctgatgttcggcttgacaaacctgtaacaggagaccaaatagatctgtatgccaac
aagctgggagaacaatggaaaatactggctccatacttagaaatgaaagactctgatata
agacagattgagtctgacagtgaggatgtgaagatgagagctaagcagttgctagttgca
tggcaggatcaagagggaatacatgcaacacctgagaatctcataaatgcattaaataaa
tctggattaagcgaccttgcagaaagtctaactaatgacactgaaacaagtagttaa

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