Sarcophilus harrisii (Tasmanian devil): 100919223
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Entry
100919223 CDS
T02286
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04612
Antigen processing and presentation
shr05145
Toxoplasmosis
shr05152
Tuberculosis
shr05164
Influenza A
shr05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
100919223 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
100919223 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
100919223 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
100919223 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
100919223 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
shr01001
]
100919223 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
shr04054
]
100919223 (CIITA)
Enzymes [BR:
shr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
100919223 (CIITA)
Protein kinases [BR:
shr01001
]
Serine/threonine kinases: Other
TAF1 family
100919223 (CIITA)
Pattern recognition receptors [BR:
shr04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
100919223 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_9
NB-ARC
CARD
Motif
Other DBs
NCBI-GeneID:
100919223
NCBI-ProteinID:
XP_023353351
Ensembl:
ENSSHAG00000006475
LinkDB
All DBs
Position
1:complement(304196613..304275151)
Genome browser
AA seq
1190 aa
AA seq
DB search
MVMDQFKAILPQVRALLSNAWPSQVRDFLDDLLEKKLLSKEYHQALLQESDGEALARKVS
LSLLEKWDLCLSTLIQYVGHPENKLQTPGMDGVSFSRSQGADQCAAMESGPLTEGSYMGL
LQSDVDPLHLFHFYDQSLATEEELEFSLDPETDTINCDQVNRLWNAIEDEGTGEAYDRIA
ALAEYMFSDRYPETEGIFGNIGPDEVVNENLDSLTEIPQKSQKCQKRLFLDNPEPQADSW
ETKRRKPESSSAIPLVTNNLVTVSSNNNLVPKSSLSPVADQVAKPSLLSLEETFLVPMSS
ASPVLTCLNFNGGPIQLIPTFSTFPQGVLHFTVENKVSNIILYPTASGGDGTIQSLPVSP
DRYGSTSPFAPSAADMPNMPEASALTSQDRKTESVERFSHALHKTYEDVPEGLNRHYIDV
GLTRTQVEKNSKFQEKELAIQDWTERQKARVGWREVFASPRGQKRETQVIAVLGKAGLGK
SAWTREVCRNWARGQLPQYEFVFHYKCCSLNLPGNDYCLKDLFFRLCNHSLEESEEIFKY
ILKHPNRTLIILDSFEELEGQDGFLNYPASPCPRESRPIKGLLAGLFQRKLLRGCTLLIT
ARRKGKFIQYLAKVDRLLEVQGFSDEQVESYFEKYFQGSPSDRDEALRLVRAQPYLLSHC
YSPAVCHSLCQLCEKIMAQEGPAQLPSTLTGLFVSLLCSVLRAREKGSSETWSRDCLAGL
AELAWELGQKHCNVLREDQFPSTEVKEFAIRGDFVWPLPIAREPEMAFSTFVLQNFLGAL
RLALSEEVRAKELPRYLALTPRKKKPYDNWLERVPHFLAGLLFQPLSSCLGPLGGNEQVG
LVCKRQKVLLSYLTQLQPGTLGPGRLLELLHCAHEATNSHLWQHVTAGLPSCLSFCRVRL
APPDVHVLGEALKAASKDFSLDLRNTSIDLQGLRTLVQLGCVTCFRASLSDTVWLWESLR
QSGEYELLQSSTEKFTIDPFKVKSMKDVEDLCSLVQIQDLGNAAIEAVNPLPVIRDLKKL
EFALGPVLGPQGFPKLVKILAAFSSLQHLDLDTLSENKIGDEGVAQLSAIFPELKSLETL
NLSQNNITDMGATELAKALPSLARSLVTLSLYNNCICDTGAENLASVLPDMVSLRMLDVQ
YNKFTGAGAQQLTASLKKCPHIETLAMWNPTIPYGVQEHLQQLDSRISLR
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggtcatggaccagttcaaggcaatcctgccccaggtgagggctctgctatccaatgct
tggccttcccaggtacgagactttctggatgatcttctggaaaagaaacttctctctaaa
gagtaccaccaggccttgctccaagagtctgatggagaagcattggctaggaaggtttcc
ttgtccctgttggagaagtgggacctgtgcctaagcaccctgatccagtatgtaggacat
cctgaaaacaagctccagactccagggatggatggggtctccttctcaaggagccaaggt
gctgatcagtgtgcagctatggaatctgggccattgacagaaggaagctacatggggcta
ctacaaagcgatgttgaccccctacatcttttccatttttatgaccaatccctggcaaca
gaagaagagcttgagttctctttagatcccgaaactgatacaatcaactgtgatcaggtc
aacaggctatggaatgccatagaagatgaggggacaggagaggcctatgacaggatagct
gcactggcagaatatatgttctcagatcgatatccagagacagaaggcatttttggaaac
attggcccagatgaagtggtcaacgagaacttagattcattgactgagataccacagaaa
tcacagaaatgtcagaaaagattgtttctggataatcctgagcctcaggcagacagttgg
gagaccaaacgcagaaagccagaatcatcctcagctattccattggtgaccaacaattta
gtgacagtgtcttctaacaacaacttggtcccgaagagctctctgtctcctgttgcagac
caggttgccaagcccagcctgctctctttggaagaaacctttcttgtgcccatgtcctca
gccagtcctgttctcacttgcctgaatttcaacgggggacccatccaactcatccccacc
ttctctacttttcctcaaggtgtcttacacttcacagtggaaaacaaggtctccaacatt
atattatatccaactgcatcaggaggtgatggtaccattcagagcctcccagtatcacct
gacaggtatggctctaccagtccatttgctccatcagcagcagatatgcccaacatgcct
gaggcctcagctctaacttcacaagacagaaaaacagagtctgtggaacggttctctcat
gctctgcacaaaacttatgaggatgttccagaaggtctcaacagacattacattgatgta
ggcctcacaagaactcaagtggagaaaaatagtaagtttcaggagaaggaactggcaatc
caggactggacagagagacagaaggcccgtgtgggatggagagaggtgtttgccagcccc
aggggacagaagagggaaacacaggtgatcgcagtactgggcaaggctggtctgggcaaa
agtgcctggacccgggaagtctgtaggaactgggcccggggccagctaccccagtatgaa
tttgtttttcactacaaatgctgtagcctgaacttgccagggaatgactactgcttgaag
gatctatttttcagactctgtaatcactcactggaagagagtgaggaaatcttcaaatac
attttgaagcacccaaatcgcactttgatcattctggattcctttgaggagctagaaggg
caagatggctttctgaattatccagccagtccctgtcctagggagtcccggcccatcaaa
gggctgctggctggtctctttcaaaggaagctcctgaggggttgcaccctgctgatcaca
gctaggcggaagggaaagtttattcagtacctggccaaggtagacaggcttctggaggtg
cagggcttctccgatgagcaggtggagtcttactttgaaaaatacttccagggttcccca
tcagacagagatgaggccttgaggcttgtccgggcccagccatacctgctcagtcactgc
tacagccctgctgtgtgtcattccctctgccagctttgtgagaagatcatggcccaggag
ggtccagcccaacttccctccacactcaccggtctcttcgttagcctcctttgctcagtc
ctgagagccagggaaaaggggtcatctgaaacttggtccagagactgcctggcaggcttg
gcagagctggcctgggaactaggccagaaacattgcaacgtcctgagagaagaccagttc
ccctcaacagaagtgaaggaatttgccattaggggggactttgtgtggccactcccaata
gccagagaaccggagatggccttctccacctttgtcctgcagaacttcctgggagctctg
aggctggctctcagtgaggaagtaagggccaaggagctccccaggtatctagccctgact
cctaggaagaaaaagccctatgacaattggctggagcgggtacctcacttcctggccggg
ctcctcttccaacccctgtcctcctgccttggacctcttggtggaaatgagcaggttggg
cttgtgtgcaaaaggcagaaggtactcttgagctacctgacccagctacagccggggaca
ctggggcctgggagactccttgaactgctgcactgtgcccatgaggcaaccaatagccat
ctgtggcaacacgtaacagctgggctgccctcctgcctctctttctgcagagtccgcctg
gcccccccagatgtgcatgttttgggtgaggccttgaaagcagccagcaaagacttctct
ctggatctcaggaacacctccattgacctgcaagggttaaggacccttgtccaacttggt
tgtgttacctgcttcagggcatctctgagtgacacagtgtggctgtgggaatcccttcgg
caaagtggagaatatgaactactccaaagttccactgagaagttcaccatagatcctttc
aaagtcaaatccatgaaggatgtagaggacctttgtagcctggtgcagatccaagactta
ggaaatgctgctatagaggccgttaacccccttcctgtcatcagagacctgaagaaactt
gagtttgcacttggcccagtgttgggtccccagggttttccaaaattggttaagatactt
gcagctttttcatctcttcagcatttggacctggacaccctgagtgagaacaaaattggg
gatgaaggtgtggctcagctctctgccatctttccagagctaaaatctttggaaaccctg
aacttatctcagaataacatcactgatatgggagccacagagctggccaaggctctgcca
tcactggcaagatctcttgttacattgagcttgtacaacaactgcatctgtgatactgga
gccgagaaccttgctagcgtgcttcctgacatggtatccctgagaatgcttgatgtccag
tacaacaagttcacaggggcaggagcacaacagctcacagccagtttgaagaaatgtcca
catattgagacactggcgatgtggaatcccaccattccttatggggttcaggaacatcta
caacagttggactcccgaataagcttgcgataa
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integrated database retrieval system
