Sarcophilus harrisii (Tasmanian devil): 100919545
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Entry
100919545 CDS
T02286
Symbol
COL17A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100919545 (COL17A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF6602
DUF2868
Motif
Other DBs
NCBI-GeneID:
100919545
NCBI-ProteinID:
XP_031805215
Ensembl:
ENSSHAG00000017266
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Position
2:complement(560103262..560163954)
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AA seq
1472 aa
AA seq
DB search
MDGTKKGRREGSEVTERVITETVTTRLTSLPPKGGTSNGYAKTSSLTGGSRLEKQSLTHG
SSGYINSTGSLRGNASTSSYRRAQSPASTLPNSPGSTFERKSHVTRHATYEGSSSGNSSP
EYPRKELGSSSTRGRSQTRESEIRVRLQSASPSTRWTELDDVKRLLKGSRSASASPTRNS
SNTLPIPKKATVETKMVTESSQSVSGTYDTTIVDTNLPSYMWSSTLPAGSSMGAYHNNMT
AQSSSLLNTNAYSTGSVFGVPNNMASCSPTLHPGLSTCSSVFGVQNNLAPSSSALAHGTT
TTTTSTVYGVKKNTTQSPAVVSTGVSTSAVGTLGSHSDDLLRKDCKFLLLEKDNAPAKKE
MELLIMTKDSGKVFTASTTGLSTTSFSEDTLKKDKQAISSSYASDSCFKSEANGGLKVAS
TKDKATYAEIQGDDHVFGGKGGGGGGGGGGGGGAGFGAAPAWCPCGSCCSWWKWLLGLLL
AWLLLLGLLFGLIALAEEVRKLRARVDDLEKINTSMFKHEDRISKDRSFAVSHVGGGTGE
LDSHNQEALWAFVKSRLLMEQEKGNLRGNPGPKGDMGIQGPKGDRGLIGVPGVPGIMGHP
GPEGPKGQKGSVGEPGLEGIKGQRGQEGPSGPRGEPGPPGSGEKGDRGIPGNPGPHGPPG
VPGSVGPKGSMGAPGPQGPSGPSGIQGFRGEAGLPGAKGERGPMGPPGPKGDPGEKGSRG
LTGEPGLRGLPGATGEPGAKGAVGPAGPDGHQGPRGEQGITGMPGIRGPPGPAGEGGKPG
LTGPQGPPGLPGTPGRAGAKGDTGTPGKIVTSEGTSTITVPGPPGPPGSMGPPGPPGLPG
PIGPAGLPGQQGPRGERGIPGESIIESSSSSGVVSAPHAAQLQGPPGPPGPPGPPGASIT
GPPGPRGPAGEGLPGPPGPPGSFLTNSETFFSGPPGPPGPPGPKGDQGSPGPRGYQGDPG
LPGLSVSGSDTLGVALQGPPGPPGIQGVPGPKGDKGDPGVPGAPGIPGSPSRGGSSSSRG
LPGPPGPPGPPGSISSSRREIQQYISDYIQSDSIRSHLSGIQGPPGPPGPPGPVTTISGE
TFDYTELASRVMNYVRNSGYNSGSFSSISSEDILLVLQREEVRQYLQQYLMGPRGPPGAG
GDGFLQSLDYEELTNRILSYMRSSGISVGLPGPPGPPGLPGTSYQELLSLLRGSEFGGIV
GPPGPPGPPGPSGNSWSSLSMEELSSYLQSAGLSSVSGPPGPPGPPGPRGPPGVSAALAT
YATENSDSFRSELISYLTSPDVRASSWDLRAPEPPVRAGLAAQGPPGRQSARGAAGGRPA
RRRPLGGRPPAPAWALAGGASSQSLAGDLDYNELAVRVSESLQRQGLLQGMAYTVQGPPG
QPGPQGPPGISQVFATYSNVTEDLMDFFRTYGTIPGPKGDTGFPGPKGERGPAGNPGRPG
PPGPRGQKGDKGDKGEQVYVGRRRRRSIAVKP
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atggatggaaccaagaaaggccggagagaaggctctgaagtcacagaaagagttatcact
gaaacagtaaccacaagacttacatctttgccaccaaaaggaggaaccagcaatggatat
gctaaaacgtcatctctcactggaggaagtaggctggaaaagcagagtttaacccatggc
agcagtggctatataaattctactggaagtttaagagggaatgcttctacatccagctat
aggagggctcagtctcctgcctctacactcccaaattcaccaggctcaacctttgaaagg
aaaagtcatgtcacccgccatgcaacatatgaagggagctccagtgggaattcttctcca
gaataccctcggaaggaacttggatcttcttccaccagaggacggagccagactcgagag
agtgaaattcgtgttcgcctgcaaagtgcttccccatctaccagatggacagaattggat
gatgtgaaacgtttgctcaagggaagccgatcagctagtgcaagtcccactcggaactcc
tccaacacacttcccatccccaagaaagctactgtggaaaccaagatggtgaccgagagt
tctcagtcagtatcaggcacttatgacacgactatcgtggatactaaccttccctcctac
atgtggtcctctaccttgcctgcgggttcatccatgggagcttatcacaacaacatgaca
gcccagagttcttcccttctcaatacaaatgcttattcaacaggatcagtgtttggtgtt
cccaacaatatggcttcctgctcacccactctccatcctgggctcagcacctgctcctca
gtgttcggtgtccaaaataacttggctcccagctcctctgctctggcccacggaaccacc
accaccaccacttctacagtgtacggtgtaaagaaaaacacaacccagtcccctgccgtt
gtaagtacaggtgtgagcacttctgcagtaggtaccctcggctcccacagtgacgatctg
ttacgcaaggactgcaaattcttgctgctggagaaagacaatgccccagccaagaaagag
atggagttgcttatcatgaccaaggacagcgggaaggtcttcactgcttccaccactggg
ctcagtacaacttcattctcagaagacactttgaagaaagacaagcaagcaatctcatcc
tcctatgcatctgactcctgtttcaagtctgaagctaacggaggcctgaaggtcgcatcc
accaaggacaaagccacgtatgcagaaatccagggagacgaccatgtttttggtggtaaa
ggaggaggaggaggaggaggaggaggaggaggcgggggagcaggatttggggctgcccct
gcctggtgtccctgtggctcctgctgtagctggtggaagtggctactgggcctgctcctg
gcctggctgttacttctcggattgcttttcggactcattgctttggcggaagaggtgagg
aagctgagagctcgtgtggatgacctggagaagatcaacactagcatgtttaagcatgaa
gaccggatcagcaaagaccgaagcttcgctgtctcccacgtcggtggggggaccggggag
ctggacagccacaaccaggaggctctctgggcttttgtgaaaagcaggctgctgatggaa
caggaaaaaggaaatcttcgaggaaaccctggaccaaaaggtgatatgggaatacaaggt
ccaaaaggagaccgggggcttattggagttccaggtgtcccagggattatgggccatcca
ggcccagaaggaccaaagggacagaaaggcagtgtgggggaacctggcctggagggaatc
aagggtcagagaggacaagaaggtccatcagggcctcgtggtgaaccaggaccccctggg
tctggagagaaaggagacagaggtattcctggtaacccaggtcctcacggcccccctggt
gtgcctggatctgttggtcccaaaggttccatgggtgcccctggacctcagggtccttca
ggtccttctggtatccaaggcttcagaggagaagctggtctccctggtgccaaaggtgag
agaggaccaatgggacccccaggacccaaaggggatcctggcgagaaaggatctcgaggt
ctcacaggagaacctggcttaagaggtcttcctggtgcaaccggtgaacctggggctaaa
ggagcagtgggtccagctggtccagatggacaccaaggcccaagaggtgaacaaggaatt
acagggatgcctggaatccgtggtccaccaggaccggcaggagaaggaggaaaaccaggc
ctcacaggaccccaaggacctccaggacttcctgggaccccaggccgagcaggggctaaa
ggtgatacaggcactccaggcaagattgttacttcagagggaacatcaacaatcactgtt
ccagggcctccaggaccaccaggatccatgggacccccaggtccacctggccttccagga
cctattggcccagctggtctcccaggacagcaaggtccccgaggggagagaggcattcca
ggggaatcaataattgaaagcagttcttcttcaggggttgtttcggctcctcatgctgct
caattgcaaggacccccaggacccccaggacctccaggaccaccaggagcttccatcaca
ggccctccaggacctcgaggtccagcaggggaaggcctaccaggacctcctggacctcct
ggaagtttccttacaaactcagaaaccttcttctctggtccccctggcccacctgggccc
cctggccccaagggagatcaaggttctcctggaccacgaggataccaaggggacccaggc
cttccaggactctctgtctcaggttcagacactctgggagttgctctacaaggcccacct
ggcccacctggtattcagggagttccagggcctaagggtgacaaaggcgaccctggtgtc
ccaggtgctcctggaatccccggaagcccctctcgaggaggatcatcaagttctagggga
ctcccaggcccccctggtccccctggcccccccggttccatcagcagctccagacgggag
attcagcagtacatctctgattacatacaaagtgacagcatcagaagtcacctgtcggga
attcagggtccccctggtcctccagggcctccaggacctgtcaccaccattagtggggaa
acttttgattacactgagctggcaagtcgagtcatgaactacgtaaggaattctgggtac
aattcaggttccttttcctctatttcctctgaagacatcctgcttgtgttgcaaagagaa
gaagtgcgccaatatcttcagcaatatctgatgggtcctcgtggacctcctggagccggt
ggggacgggttcctacagtctctggactatgaagagctgaccaaccgcatcctaagctac
atgagaagttctgggattagtgtcggactcccaggtcctccgggtccgccgggtctccca
ggaacttcctaccaggagctactgtctctgctccgaggatctgaattcggcggcattgtg
ggaccccctgggcccccaggacccccaggaccttccggcaactcctggtccagcctcagt
atggaagaactttcctcctacctgcagagcgcgggcctctcctcggtctcgggccccccg
ggcccccccgggcctccaggcccgcgcgggcctcccggggtttccgcggccctggcaacc
tacgcgaccgagaacagcgacagcttccggagcgagctcatcagctacctcacgagtccg
gatgtccgggcttcatcgtgggacctccgggcccccgagcctccggtgcgggcggggctt
gccgctcagggccctccagggagacagtcggctaggggagcggcggggggccgccctgca
cggaggcggcccttgggcggccggcccccggcaccggcgtgggccctggcaggcggagcc
tcgagccagagcctcgctggggatctggactacaacgagctggccgtgcgggtgtcggag
agtctgcagcgtcagggtctgctacaaggtatggcttacactgtgcaaggacctccaggc
cagcctgggccccagggccctcccggcatcagccaagtatttgccacctacagcaatgtg
actgaggacctcatggacttcttccgaacctatggaacaattccaggaccaaagggagac
acagggtttccaggacccaaaggtgaaagaggaccagctggtaatcctggcagacccgga
cctccaggccccagaggacaaaaaggagacaagggagataaaggggaacaagtctatgtc
ggcaggaggaggaggagaagcattgctgtcaaaccatga
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integrated database retrieval system
