Stereum hirsutum: STEHIDRAFT_79123
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Entry
STEHIDRAFT_79123 CDS
T03127
Name
(RefSeq) DNA ligase/mRNA capping enzyme
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
shs
Stereum hirsutum
Pathway
shs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
STEHIDRAFT_79123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shs03400
]
STEHIDRAFT_79123
Enzymes [BR:
shs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
STEHIDRAFT_79123
DNA repair and recombination proteins [BR:
shs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
STEHIDRAFT_79123
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
18807085
NCBI-ProteinID:
XP_007304038
JGI:
Stehi1_79123
LinkDB
All DBs
Position
Unknown
AA seq
617 aa
AA seq
DB search
MFPDEDKERKFGMQEKVLAEALGGVLGVEMGRGGRGEVLREWRDGEDCLGKVVGDVVWEK
NPDEEAVGPLSLLEVDSLLSELAALSIWSNSSFRSTSTGSDSPGRRTRKEILRTLYTDLP
PRDACYLTQIILKDLRPVLYPTPGRTTAESLLGFKSDSVKMLSKEDAMRLWDDTGMMRKA
FDARGTFEEAALVFEGGEEQVNPVVGKKLQIPKCVKGQGCKQALRHFKDASTVYAETKYD
GERVQLHFWLDEHGVSHIKIYSKSGRDSTLDRAALHPLIRDVLQPGKHWQKSLILEAEMV
AWSDELSRVDEFWRIRSLVESTAIGGRARYKWRTYHAHSSQCSIISDASDSDTRHLSLIF
FDVLLIDSKSLLPMPYTRRRTLLSSIVSPLEHGRVMLAESWPIDMSKGMEEGARQLREIF
AGSLAGFEEGLVLKDGDSGWRNWRRPWVKLKKDYITGYGDCVDMVVMGAGWDKDRARELK
VGPETLTTFYLGVQTNDSDTRRDPKIKPHFEMFMLVSYGLSREQLEDANFRLKGLPYTFA
YSKRLPPPTVMMHEPLLAEVFGAGFTKDRGAKNYTLRFPRMTKLHRTNERSWRSAVSMSQ
FDKLAHEAVGRESSKDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtttccggatgaggataaggagaggaagtttggaatgcaggagaaggtgttggcggaa
gcgttgggaggggttttgggtgtggagatggggaggggcgggagaggggaggtgttgaga
gagtggagggacggggaggattgtctgggaaaggttgtgggtgatgttgtgtgggagaag
aatccggatgaagaggctgtcggcccattgagtttacttgaggtggatagcttactctct
gaactagcggccctatctatatggtccaattcctcctttcgttcgacgtcgacagggtcc
gactcccctggacgccgtactcgcaaagaaattctccgaaccctctacacagacctcccg
cccagggacgcctgttatttaactcagatcatcctcaaagatctccgaccggttctgtat
cctacgccaggccggaccaccgccgagtcgttattggggttcaagagcgactcggtgaag
atgctaagtaaagaggatgcgatgagactgtgggatgatacagggatgatgaggaaggcg
tttgatgcgcgaggaacgtttgaagaggcagcgctggtttttgagggtggtgaggaacag
gtaaacccggtcgtcgggaagaaactgcagatcccgaaatgtgtcaagggccaaggttgc
aaacaggccctccgtcatttcaaggatgcctcgacggtgtatgcggaaacgaagtacgac
ggcgaacgcgtgcagttgcacttttggctcgatgagcatggggtgtcgcatatcaagatt
tacagtaagagcgggagggactcaacgctcgatagagctgcgttacacccattgatacgg
gatgtgttgcagcccggtaagcattggcagaagagcttgattttggaggcggagatggtt
gcgtggtcagacgagttgagtcgcgtggatgaattctggcgcatcagaagccttgtagaa
tcgactgctattggcggacgtgcgcgctacaaatggaggacttatcacgctcacagttca
caatgctcgataatctccgacgcctccgactccgacacgcgtcacctctccctcatcttc
ttcgacgtcctcctcatcgactcaaaatccctcctcccaatgccctacacccgccggcgc
acccttctctcctccatcgtatctcccctcgaacacggtcgtgtcatgctcgcagagagc
tggcccattgatatgagcaaaggtatggaggaaggtgcgaggcagctgagagagattttt
gcgggcagtttggcggggttcgaggaggggttggtgttgaaggatggggattcggggtgg
agaaattggaggcggccttgggttaagctgaagaaggattatataacggggtatggtgac
tgtgttgatatggtcgttatgggtgctgggtgggacaaggacagagcacgagaactgaaa
gtcggaccagagacattgacgacgttctatctcggggttcagaccaatgatagcgatacc
agacgcgaccccaaaataaagccacacttcgagatgttcatgctcgtctcctacggctta
agcagggaacaactcgaagatgccaattttcgtctcaagggtcttccatacacgttcgcc
tactcgaaaaggctcccacctccgacggtcatgatgcacgaaccgctcttagctgaagta
ttcggcgctgggttcacgaaggatcgaggagctaagaactacaccctccgtttcccgcgc
atgaccaaactccaccgcacgaacgaacgctcctggcgttctgcagtctccatgtcccaa
ttcgacaagctggcacatgaagcagtaggcagggagagttcgaaagatgag
DBGET
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