KEGG   Shewanella sp. W3-18-1: Sputw3181_2277Help
Entry
Sputw3181_2277    CDS       T00453                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
shw  Shewanella sp. W3-18-1
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:shw00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    Sputw3181_2277
   03410 Base excision repair
    Sputw3181_2277
   03420 Nucleotide excision repair
    Sputw3181_2277
   03430 Mismatch repair
    Sputw3181_2277
Enzymes [BR:shw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Sputw3181_2277
    6.5.1.6  DNA ligase (ATP or NAD+)
     Sputw3181_2277
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Sputw3181_2277
DNA replication proteins [BR:shw03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Sputw3181_2277
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Sputw3181_2277
DNA repair and recombination proteins [BR:shw03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Sputw3181_2277
   NER (nucleotide excision repair)
    Other NER factors
     Sputw3181_2277
   MMR (mismatch exicision repair)
    Other MMR factors
     Sputw3181_2277
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
JGI: 
LinkDB All DBs
Position
complement(2623340..2624269)
Genome map
AA seq 309 aa AA seqDB search
MTHTSQLFLLISNPFILLRLLLVSLLLVCLLVNANPSAPKIQLATELTADKTSYDIREFL
ISEKLDGVRGYWTGHRLVTRQGYPINAPVWFTADFPTIPIDGELWLGRGQFEAISSLIRQ
SSPKEDAWRNVRFMVFDLPKAEGNFEQRYRLAIKMFAGKSAYIEVIEQFQLDSIEALYQK
LDSLVVLGAEGLMLHRRSAYYIAGRNPNLMKLKPYFDAEAKVIAHIAGKGQFTGQMGALK
VQTSDGRIFSIGTGFSHAERQHPPAVGTIITYKYLGLTVNGLPRFASFLRVRTDIVESPL
DGGVDRSGQ
NT seq 930 nt NT seq  +upstreamnt  +downstreamnt
atgactcatacaagccaattatttcttttaatctctaatcctttcattctgttgcggtta
ttattagtttccttgctgctggtatgtctattggttaatgccaaccccagtgcgcctaag
atccaacttgccacagagctgactgccgacaagacgagttatgatattcgcgagttttta
atcagtgaaaagttagatggtgtccgtgggtactggactgggcataggttagtcacccgt
caaggatatcccattaatgcacccgtatggtttactgctgattttccgacaattcctatt
gatggagagttgtggcttgggcgagggcagtttgaagctatttcaagtttaatccgtcaa
tcctctcccaaagaggacgcatggcgtaatgtacgctttatggtatttgacttacccaaa
gcggaggggaattttgagcagcgctatcgattagcgataaagatgtttgcaggtaaatct
gcttatattgaggtcattgagcaatttcagcttgatagtattgaggctttataccaaaaa
ctcgatagccttgtggttttaggtgctgaagggttaatgctccatcgccgcagtgcatac
tatattgcaggccgaaatccaaacttgatgaagttaaaaccctactttgatgcagaagct
aaagtcattgcacatattgcaggtaaaggtcaatttacgggacagatgggggcattaaaa
gtacaaacatccgatggacggatttttagtatcggaacaggctttagtcatgctgagcgc
caacatccccccgcagtgggcactatcatcacctataaataccttgggcttaccgttaac
ggtttaccgcggtttgccagttttttacgggtaagaaccgatatagtcgagtccccattg
gacggcggtgttgaccgttctgggcaataa

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