Shewanella sp. W3-18-1: Sputw3181_2385
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Entry
Sputw3181_2385 CDS
T00453
Name
(GenBank) Excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
shw
Shewanella sp. W3-18-1
Pathway
shw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sputw3181_2385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shw03400
]
Sputw3181_2385
DNA repair and recombination proteins [BR:
shw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sputw3181_2385
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Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
HHH_5
UVR
GIY-YIG
HHH
HHH_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ABM25209
UniProt:
A1RKL4
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Position
complement(2748023..2749852)
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AA seq
609 aa
AA seq
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MSSVFNAQSFLRTVSSSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLDNVKTQALV
SHIHHIDVTLTHSETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLSQHEHPRLAYHRG
PQREKGHYFGPYPNGGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVG
KVSNADYDEQVKLASLFLKGKDQQVISTLVAKMEQAAQQQEYEQAARFRDQIMALRKVAE
QQEVSNNKGDMDVIGVHYASGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFIL
QFYLNADIQRTIPKEVVISHNFEELHELEAAVSIALNKKFSIKTNVRADRASFLRLAVTN
ATNAVITRLSHKNTVEQRFVLLEEILELSTPIYRMECFDISHTMGESTVASCVVFNREGP
HKGEYRRYNIEGITPGDDYAAMKQAITRRFDKIEAGGKIPDILFIDGGLGQLRIAQKIVD
EKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESHRFA
ITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISIEMA
QTIHDALRG
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtgtttttaacgcccaaagttttttacgcacggtttcatcttctgccggggtt
tatcgcatgtatgacgtcaagggtgacgtcatctatgtgggaaaagccaaggatcttaaa
aaacggctttcgtcgtattttcgtaaaaatttagacaatgttaagactcaagccttagtc
tcgcatattcaccatattgatgtgacactgacccacagtgaaaccgatgccttgttgctt
gaaaatgattacatcaagcaatacatgcctaaatacaatgtgttgttgcgtgatgataaa
tcttacccttacattttattaagccaacacgaacacccaaggcttgcctatcatcgtggc
ccacagcgtgaaaaaggccattattttggcccttaccccaatggcggcgcggtacgtgaa
agcctgcatttaatgcagaaactctttcctattcgtcaatgtgacgacctttattacaaa
tcccgttcacggccctgtttgcagtatcagctttcccgctgtagtgcgccttgcgtggga
aaagtcagcaatgccgactacgacgaacaagtgaaacttgctagcttatttttaaaaggc
aaagatcagcaagtgatcagcacgttagtggctaagatggagcaggcggcgcagcagcag
gaatatgaacaggcggcacgctttcgtgatcaaattatggcgctgcgtaaggtcgctgag
cagcaggaagtatcgaacaataaaggcgatatggatgtgattggtgtgcactatgcgtcg
ggtatcgcctgtttccatttgttatttatccgcgagggtaaaatctttggtagtcgcagt
tattatccttctgtgccggcccagacggatatggatgaagtgctgcgatcctttattctg
cagttttacttaaatgccgatatacagcgcactattccaaaggaagtggttatcagccac
aactttgaagagttgcacgagctggaggccgcggtatccattgcactgaataaaaagttt
tcgataaagaccaatgtgcgtgccgatagggcgagttttttacgcttggctgtgaccaat
gccaccaatgctgtcatcacgcgtttatcccataagaacacggtcgagcagcgttttgta
ttattagaagaaattttagaattgagtacacctatataccgtatggaatgttttgatatc
agtcatactatgggagaaagtaccgttgcctcctgtgtggtatttaaccgtgaagggcca
cataaaggagaatatcgtcgctataatatcgaaggtattacgcctggtgatgattatgct
gcgatgaaacaagccatcactcgccgttttgataagattgaagcaggcggtaaaatccct
gatattctgtttatcgatggtggcttagggcaattacgcattgctcagaaaattgtagat
gaaaaatttgtccatctcgataaagcgccgcaattgattggagtggctaaaggggagggg
cgtaagccggggctagaaacattaattttaggggatacagaaacgagtttttcccttgaa
ggtgattcacctgcattacatctgattcagcatattcgtgatgaatcccatcgatttgcg
attacaggacatcgcaatcgtcgtcagaaaacgcgcaatacctcgacgttggaatctatt
cctggtattggtcctaaacgtcgtaaagcactcttacagcatcttggtgggttacaggag
gtgaagggggcgagtgtagccgaattagttaaagtgcctgggatcagtatagaaatggca
caaaccattcatgatgcattgcgagggtga
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