Streptomyces hygroscopicus subsp. jinggangensis 5008: SHJG_6725
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Entry
SHJG_6725 CDS
T02063
Name
(GenBank) RNA polymerase sigma factor WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
shy
Streptomyces hygroscopicus subsp. jinggangensis 5008
Pathway
shy02020
Two-component system
shy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SHJG_6725
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SHJG_6725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shy03021
]
SHJG_6725
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
shy02035
]
SHJG_6725
Transcription machinery [BR:
shy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SHJG_6725
Bacterial motility proteins [BR:
shy02035
]
Flagellar system
Flagellar assembly proteins
Stator
SHJG_6725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
Sigma70_ECF
HTH_23
UPF0122
HTH_31
HTH_37
GerE
Motif
Other DBs
NCBI-ProteinID:
AEY91992
LinkDB
All DBs
Position
7648252..7649028
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AA seq
258 aa
AA seq
DB search
MRPPAPSTLDELWRSYKATGDDRLREQLILHYSPLVKYVAGRVSVGLPPNVEQADFVSSG
VFGLIDAIEKFDIDREIKFETYAITRIRGAMIDELRALDWIPRSVRQKARNVERAYATLE
ARLRRTPTEGEVAAELGMEVDELHAVFSQLSLANVVALEELLHVGGEGGDRLSLMDTLED
TAADNPVEVAEDRELRRFLARAINTLPEREKTVVTLYYYEGLTLAEIGNVLGVTESRVSQ
IHTKSVLQLRAKLASFGR
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaccgcccgctccctcgacactcgacgagctgtggcggtcgtacaaggcgacgggg
gacgaccggctgcgggagcagctgatcctgcactactcgccgctggtcaagtacgtggcc
ggccgggtcagcgtcgggctgccacccaatgtggagcaggccgacttcgtctcctcgggc
gtgttcgggctgatcgacgcgatcgagaagttcgacatcgaccgtgagatcaagttcgag
acgtacgcgatcacccggatccgcggcgcgatgatcgacgaactgcgggcgttggactgg
atcccccgctcggtgcggcagaaggcacggaacgtcgagcgcgcctacgccaccctggag
gcgcggctgcggcggacgccgacggagggggaggtcgccgccgagctgggcatggaggtc
gacgaactgcacgccgtgttcagccagttgtcgctggccaacgtcgtcgctctggaggag
ctgctgcacgtcggcggcgagggcggggaccggctcagcctgatggacacgctggaggac
accgccgccgacaatccggtggaggtggccgaggaccgcgagctgcgacggttcctggcg
cgggcgatcaacacgctgcccgagcgcgagaagaccgtcgtcaccctgtactactacgag
gggctcaccctcgccgagatcggcaacgtgctcggggtcaccgagagccgggtcagccag
atccacaccaagtcggtgctccagctgcgggccaagctggcgagcttcgggcgttga
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