Shinella sp. HZN7: shn_07185
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Entry
shn_07185 CDS
T04278
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
shz
Shinella sp. HZN7
Pathway
shz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
shn_07185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shz03019
]
shn_07185
03016 Transfer RNA biogenesis [BR:
shz03016
]
shn_07185
Enzymes [BR:
shz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
shn_07185
Messenger RNA biogenesis [BR:
shz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
shn_07185
Transfer RNA biogenesis [BR:
shz03016
]
Prokaryotic type
tRNA degradation factors
shn_07185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
ANH03847
UniProt:
A0A1A9FY71
LinkDB
All DBs
Position
complement(1492205..1494556)
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AA seq
783 aa
AA seq
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MTREPRSRAGRSTRPGRAGRDVPPIDNIPIIHGVIPPRDVLLRFIADNPEQASKREIAKA
FGLKGEARVELKALLKSFEEDGLLEKRRKSLVRPGALPPVTVLDITTRDIDGELIGRPAE
WLDDAGVAPAVLIRQSAGLRKDKAPVAGLGDRVLAKIFPAKERGGPAYTGRVIKVLDKKK
NSGMGVFRAMAGGGGRIMPIDRRGEEMEVDAEFTAGATDGDLVEIDVVRMGRYGLPRAQI
KGVIGSVASEKAISTIAIHSHGIPYIFPDAVIREAEAAGPATMAHREDWRSLPLITIDPA
DAKDHDDAVFAEPDPSPDNPGGVIVTVAIADVSYYVRPKSALDREALKRGNSVYFPDRVV
PMLPERISNDLCSLKEGVDRPALAVRMVFSHEGRKASHTFHRIMMKSAAKLSYQQAQAAI
DGAPDDKTGPILETILKPLWNAYRIMTVGRNRRQPLELDMPERKILLKEDGTVDRVFVPP
RLDAHKLIEEMMIQANVAAAETLEKKRQVLVYRVHDAPSLAKQEVLREFLQTLDISLVKG
GNMRSNHFNGVLAKAKDKPFEQMVSEMVLRSQSQAIYSPDNIGHFGLNLMKYAHFTSPIR
RYADLIVHRALVGSLGLGEGGITPDEEATLDDIAAEISTFERRAMAAERDTVGRLIAHHL
AGRIGEEFDGRVSGVTKAGLFVTLPEYGADGFVPISMLGRDYYIYDEAHQALSGEKTGLG
YRLGDAVRVKLAEAVPLAGSLRFDMISEGRKMPTAVRSFHKSGRRRGSAPRHQPGTRPPR
GRR
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgacgagagaaccacgcagccgggcaggacgatccacgcggcccggccgcgcgggccgt
gacgtgccgccgatagacaatatcccgatcatccacggcgtcatcccgccgcgcgacgtg
ctgctgcgcttcatcgccgacaatccggaacaggcctcgaagcgcgagatcgccaaggcc
ttcggcctgaagggcgaagcgcgtgtcgagctgaaggcgctgctgaaatccttcgaggag
gacgggttgctggaaaagcgccgcaagtcgctggtccgccccggagccctcccccccgtc
accgttctcgatatcacgacgcgcgatatcgacggcgaactgatcggccgcccggccgaa
tggctcgacgatgcgggcgtcgcgcccgccgtgctgatccgccagtcggccggcctgcgc
aaggacaaggctcccgtcgccgggctcggcgaccgggtgctggcgaagatcttcccggcg
aaggaacgcggcgggccggcctataccgggcgggtcatcaaggtgctcgacaagaagaag
aattccggcatgggcgtgttccgcgccatggcgggcggcggcgggcgcatcatgccgatc
gaccggcgcggcgaggagatggaggtcgatgcggagttcacggcgggcgccacggacggc
gacctcgtggagatcgacgtcgtgcgcatgggccgctacggcctgccgcgcgcgcagatc
aagggcgtgatcggctcggtcgcctcggaaaaggcgatctcgacgatcgccatccattcc
cacggcatcccctatatcttccccgacgcggtgatccgcgaggcggaagccgcagggccc
gcgaccatggcgcaccgcgaggactggcgcagcctgccgctcatcaccatcgacccggcc
gacgccaaggaccatgacgacgccgtcttcgccgagcccgacccctctcccgacaatccc
ggcggcgtgatcgtcaccgtcgccatcgccgatgtcagctattacgtgcggccgaaatcc
gcgctcgaccgcgaggcgctgaagcgcggcaactcggtctatttcccggaccgcgtcgtg
cccatgctgccggaacgcatctccaacgacctctgctcgctgaaggaaggcgtcgaccgg
ccggcgctcgcggtgcgcatggtcttctcgcatgaaggccgcaaggcaagccacaccttc
catcgcatcatgatgaagagcgcggcaaagctctcctaccagcaggcccaggcggcaata
gacggcgcgcccgacgacaagaccggaccgatcctggagacgatcctcaagccgctgtgg
aacgcctaccgcatcatgacggtcggccggaaccgccgccagccgctcgaactcgacatg
ccggaacgcaagatcctcctgaaggaggacggcaccgtcgaccgggtcttcgtgccgccg
cggctcgatgcgcacaagctcatcgaggagatgatgatccaggccaacgtcgcggccgcc
gagacgctggagaagaagaggcaggtcctggtgtaccgcgtgcacgacgcgccctcgctc
gccaagcaggaggtgctgcgcgagttcctgcagacgctcgacatctcgctggtcaagggc
ggcaacatgcgctccaaccatttcaacggcgtgcttgcgaaggccaaggacaagccgttc
gagcagatggtgagcgagatggtgctgcgctcgcagagccaggcgatctacagtccggac
aatatcggccatttcggcctgaacctcatgaaatacgcccatttcacctcgccgatccgc
cgctatgcggacctcatcgtgcaccgggcgctggtgggctcgctcgggcttggcgaaggc
ggcatcacgccggacgaggaagccacgctcgacgatatcgcggccgagatctcgaccttc
gagcgccgcgccatggcggccgagcgcgacacggtcggccggctgatcgcccatcacctg
gccggacgcatcggcgaggaattcgacgggcgcgtctccggcgtgaccaaggcgggactt
tttgtcaccctgccggagtatggtgccgatggtttcgtgcctatatctatgctcggacgc
gactactacatctatgacgaggcgcatcaggcgctgtccggcgaaaagaccgggctcggc
tatcgcctcggcgatgcggtgcgtgtcaaactcgcagaagcggtgccgcttgccggttcg
ctccggttcgacatgatcagcgagggacgcaagatgccgacggcggtgcgctccttccac
aagtcgggccggcgcaggggcagcgcgccgcgtcaccagccgggcacgcgcccgccccgc
ggcagacgctga
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