KEGG   Shinella sp. HZN7: shn_27290Help
Entry
shn_27290         CDS       T04278                                 

Definition
(GenBank) DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
shz  Shinella sp. HZN7
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:shz00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    shn_27290
Enzymes [BR:shz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     shn_27290
DNA repair and recombination proteins [BR:shz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     shn_27290
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
pShin-03:complement(15260..17812)
Genome map
AA seq 850 aa AA seqDB search
MIMATLDVYRQKRDFKATSEPRGKKARRGGNSFVIQKHDATRLHYDFRLEMDGVLKSWAV
TRGPSLVPSEKRLAVHVEDHPLAYGDFEGTIPKGEYGGGTVIVWDRGTWEPLGDARKAYA
KGHLEFTLDGEKLHGRWHLVRMQGKPGEKRENWLLIKGDDEFAMPEGEDDLLDERPESVK
TGREIADVATEEPGWSSKTGRIRTSSRKKAKPEKKEPEAEAPDPSGLKGVRKAKLPDFLP
PTLATLAAAPPAGERWLHEIKFDGYRLQARIEAGRVKLLTRSGLDWTKKFGKAVVAALAA
LPVGTALIDGELVVETGAGASDFSALQADLSAGRDDRFTFYVFDLLHLDGYDLTHLRLEA
RKALLEKLVPETESILRYSGHFDENGALVLRHACRLSLEGVVSKLRDAPYREGRSKSWIK
SKCSARQEFVIGGYAPSTVSRQAIGSLLLGVHHKNGALEPVGRVGTGFSAPVAADLFKRL
SRMRTDESPFGRKLTAEEARQARYVRPELVAEVEFRAWTADGHLRHASFRGLREDKPAKE
VIAEMPKSRTSAASKVEKAPRRTVRLTHPDRVYWPEEGVTKEGLADYYTEVWRHIAPHIV
GRPLALLRAPSGIDGQTFFQKHAWKGINANIIEVQDPMEKDDEPYVAINDLDGLMGLVQS
AVLEIHPWGSTLADWERPDRIIMDLDPGEGVEWQAVIEAAEETRKRLEAAGLNAFVKTSG
GKGLHVCAPLKPSARWPAVKTFCKGIADAMAKDSPDKYVSTITKSKRRGKILIDYLRNQR
GMTAVAPYSTRARPGAAVSMPLAWNELSADIGPAYFTVDNTPTRLQALTTDPWADFKKAA
EPLKTGKAKG
NT seq 2553 nt NT seq  +upstreamnt  +downstreamnt
atgatcatggcgacgctggacgtctaccggcagaagcgggacttcaaggccacctccgag
ccgcgtggcaagaaggcccgcaggggcggcaacagcttcgtcatccagaaacatgacgca
acacggctgcactatgattttcgcctcgaaatggacggcgtactcaaaagctgggcggta
acgcgcggcccgagcctggtgccgagcgaaaagcggctggccgtgcatgtggaggaccac
cccctcgcctatggcgatttcgagggcacgatccccaagggcgaatatggcggcggcacc
gtcatcgtctgggatcgcggcacctgggaaccgctcggcgacgcgcgaaaggcctacgcc
aagggacatcttgaattcacgctcgacggcgagaagctgcacggccgctggcatctcgtg
cgcatgcagggaaagcccggcgaaaagcgcgagaactggctgctgatcaagggcgacgac
gaattcgccatgccggagggcgaagatgacctgctcgatgaacggccggaatcggtgaag
acggggcgggagatcgccgatgtcgcgacggaggaacccggctggtcctcgaagacgggg
cgcatccgcacgtcatcgagaaagaaggccaaacccgagaagaaagaaccggaggcggaa
gcgcccgatccttccggcctcaagggtgtgcgcaaggcaaagctgccggacttcctgccg
ccgacgctggcgacactggcggctgcgccgccggcaggcgaacgctggctgcacgagatc
aagttcgacggctaccggcttcaggcgcgcatcgaggccggccgggtcaaactcctcacc
cgcagcgggctggactggacgaagaaattcggcaaggccgtggtcgccgcgcttgccgca
ctgccggtcggcacggcgctgatcgacggcgagctcgtggtcgagaccggcgccggcgca
tccgacttctccgctctccaggccgatctcagcgcaggacgggacgaccgcttcaccttc
tacgtcttcgatctcctgcaccttgacggctacgacctcacccacctgcggctcgaggcg
cgcaaggccctgctcgaaaagctcgtgccggaaacggagagcatcctgcgttacagcggc
catttcgatgagaacggcgcgctggtgctgcgccatgcctgccgtctcagcctcgaaggc
gtcgtctccaagctgcgcgacgcaccctatcgcgaaggccgcagcaagagctggatcaaa
tcgaaatgttcggcccggcaggaattcgtcatcggcggctacgccccgtccaccgtatcg
cgccaggcgatcggctcgttgctgctcggcgtccaccacaagaacggcgcgctcgaaccg
gtcggccgcgtcggcaccggcttcagtgcgcccgtcgccgccgatctcttcaagcgcctt
tcgcgcatgcggacggacgaaagccccttcggccggaagttgacggcggaagaggcacga
caggcccgctatgtgcggccggaactggtggccgaagtggaattccgggcctggacggcc
gatggtcatctgcgccacgcatcatttcgtggcctcagggaagacaagccggcaaaggag
gtcatcgccgaaatgccgaagtcaaggacatcagcagcatcgaaggtcgaaaaggcgccg
cgccgcacggtgcgcctcacccatccagaccgggtctactggcccgaagaaggcgtcacc
aaggaagggctcgccgattattacaccgaggtctggcgccatatcgccccgcatatcgtc
ggccgcccgcttgcgctgctgcgcgcgcccagcggcatcgacggccagaccttcttccag
aaacacgcctggaagggcatcaatgccaatattatcgaagtgcaggatcccatggagaag
gacgacgaaccctatgtcgccatcaatgatctcgatggcttgatgggcctcgtgcaatcg
gcggtgctggaaatccatccgtggggctcgacgcttgccgactgggagcggccggaccgc
atcatcatggacctcgaccccggagagggcgtcgaatggcaggcggtcatcgaagccgcc
gaggagacacgaaagcgcctcgaagccgccgggctcaacgccttcgtcaagacctccggc
ggcaagggcctgcacgtctgcgccccgctcaagccgtcagcacgctggccggcggtcaaa
accttctgcaagggcatcgcggacgccatggcgaaggacagccctgacaaatatgtctcg
accatcaccaaatcgaagcgtcgtggaaagatcctcatcgactatctacgcaatcagcgc
ggcatgacggcggtcgccccgtactccacccgcgcccgccccggcgcggccgtctccatg
ccgctcgcctggaacgagctcagcgccgatatcggccccgcctacttcaccgtcgacaac
acaccgacgcgccttcaggcgctgaccacggacccctgggcggacttcaagaaggccgcg
gagcctctgaagaccggcaaggcgaagggctga

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