Scardovia inopinata: SCIP_0560
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Entry
SCIP_0560 CDS
T03977
Name
(GenBank) excinuclease subunit A
KO
K03701
excinuclease ABC subunit A
Organism
sij
Scardovia inopinata
Pathway
sij03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCIP_0560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sij03400
]
SCIP_0560
DNA repair and recombination proteins [BR:
sij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCIP_0560
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SCIP_0560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
DnaJ_CXXCXGXG
AAA_16
AAA_29
Anti-TRAP
AAA_15
ATPase
BCA_ABC_TP_C
AAA_25
Viral_helicase1
DUF463
AAA_22
MobB
cobW
RsgA_GTPase
DUF4350
RecA
DUF5351
Motif
Other DBs
NCBI-ProteinID:
BAR06627
LinkDB
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Position
716866..719358
Genome browser
AA seq
830 aa
AA seq
DB search
MGIMPDQIEVRGARVHNLKNISVNVPLNKIVGISGLSGSGKSSLALGVLYAEGSRRYLES
LSTYTRRRMTGAAAANVDEILYVPASLALHQRPAVPGIRSTFGTGTELLNSLRLMFSRLA
SHRCPNGHYLPPSLAVAGGLEMTCPVCQEKFYGPSAEELAFNSQGACKTCTGTGTVMIVD
ESTLVPDDSLTIDEGAVAPWQTLMWSLMKDIARQMGVRTNVPFKDLTKKEKDIVFHGPAV
KKNIIYQNKTSGASGDMDFTYFNATYTVENALSKVKNEKGMKRVEKFLRQDVCPDCQGTR
LSPAARAPQLRGIGLDQACSMTLEDSLAWVRGVPDSLPEEMRPMAESICESFLVAARRLM
DLGLSYLTLDRASSTLSTGERQRMQLARAVRNRTTGVLYVLDEPSIGLHPANIEGLIGVM
KDLVADGNSVVLVDHDVQILRQADWFIELGPGAGENGGQVIAQGTLSELEKNTNSNIGGF
LSGKETIGVRQKSSGDDLFSKGSIDLSTGPVHTVKPLDVHIPQGRLTAVTGVSGSGKTTL
ILESLIPALQAAIEDRKLPNYVKKCLAEGISRVKLIDATPIGINVRSTVATYANVHDELR
KAFARTQEAKKKGFRAGDFSYNTGSLRCPDCDGTGTISLDVQFLPDVEIQCPECGGTRYS
KEAFSIVRKNKAGKEYSLPDIMAMDISQAMEACRDMKSVYTRLKTLNDLGLGYLTLGEAT
PSLSGGEAQRLKLASEMGRRQEDSVFIFDEPTIGLHPLDVRSLIGVFQGLIDAGATVIVI
EHDLDLIRNADYVLDMGPGGGTAGGRLVASGTPEEIASNPASVTGRYLAI
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
gtgggaattatgcctgatcagattgaagtcaggggagccagggtccacaacctgaagaac
atcagcgtgaatgttcccttgaataaaattgtgggaatttccggtctgtccggatcgggg
aagtcctccctggccttaggcgttctttacgccgaaggttccagaagatatctggaatcc
ctgtccacatataccaggagaagaatgacaggagctgcagcggctaacgtggatgaaatt
ctgtatgttccagcctctttggctctccaccagcgtcctgcagtgcccggaattcgcagc
actttcggtaccggtaccgagcttttgaacagtcttcgtctgatgttctcacgactagct
tcccatcgttgcccgaacggtcactatcttcctccctccctggccgtcgccgggggactt
gagatgacctgtcctgtctgccaggaaaaattctatggaccctcggctgaggagcttgcc
ttcaacagccagggagcctgcaagacctgcactggaaccggtactgtcatgattgttgat
gaatcaacgcttgttcctgatgattccctgaccatagacgaaggtgcggtagccccttgg
cagactcttatgtggtctcttatgaaagatatagcccggcaaatgggcgtgaggacaaat
gtcccttttaaagatcttacaaagaaagaaaaagatatcgtctttcatggccctgcggta
aaaaagaacatcatttaccagaacaagacctcaggcgcctcgggagacatggactttacc
tatttcaatgccacctataccgtggaaaacgctttgtccaaggttaagaacgaaaaaggc
atgaagcgggtggaaaaattcctgagacaggatgtttgcccggattgccagggaacgcgt
ctttctccagcagccagagcgccacaactgcgaggaataggtctggatcaggcttgttct
atgactctggaagacagccttgcctgggttaggggagttcctgacagcctgccggaagag
atgaggccaatggctgagtctatctgcgaatctttcctcgttgctgccagaagactgatg
gatctaggactttcttacctgactttggaccgagcgtcatccactctgtctacaggggaa
aggcagagaatgcaattggctcgagccgtgcgcaacagaactaccggtgttttgtatgtg
ttggatgaaccttcgattggcctacatccagcaaatatagaaggccttatcggagttatg
aaagatcttgttgcagatggcaattcagtggttctggtggatcacgatgtacagattctc
cggcaggcagactggtttatagagcttggacccggagcgggggaaaacggcggccaggtt
attgcccaggggactttgtcagaactggagaagaatacgaactccaatattggaggattc
ttgtcaggaaaagagacaattggcgtgcgtcaaaagtcctcaggagatgatttgttttcc
aagggatccattgatctttcaaccggacctgttcacactgtcaaacctctcgacgtccat
attcctcaaggcaggcttaccgctgtgaccggagtctctggctcaggcaagaccacgctc
attctggaaagtcttatacctgctttgcaggctgcaatagaagacaggaaactgccgaac
tatgtgaaaaaatgcctggcagagggcatctctcgcgtgaaactgattgatgccactcct
attggcatcaatgtccggtcaacagtagccacttacgcgaatgtgcatgatgaactccgc
aaagcttttgcccggactcaggaggctaagaaaaagggattccgggccggcgatttttca
tacaatacaggctctttgcgctgcccggattgtgacgggacaggaacaatcagtcttgat
gtacagttccttcctgatgtagagatccaatgcccggaatgcgggggaaccaggtattca
aaagaggcgttttcgattgtaagaaaaaataaagctgggaaggaatattctctcccagat
attatggccatggacatcagccaagctatggaagcttgcagggatatgaagtccgtttat
acaaggcttaaaacgttgaatgatctgggtcttgggtatttgaccctaggggaggcgacc
cccagcctttccggtggtgaagcacagcgtctgaagttggcttccgaaatgggaagacgc
caggaggattccgtttttattttcgatgaaccaaccattggtcttcaccctcttgatgtg
cgctccctgattggagttttccagggactgattgatgctggtgccactgttattgttatc
gagcatgatctggatttgatcaggaatgcagattatgtcctcgatatgggccccggagga
ggcaccgccggcggtcgccttgtcgcttccggtactccggaggagattgctagcaatcct
gccagcgttaccggtcgatatctggctatctga
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