KEGG   Sinorhizobium sp. CCBAU 05631: SS05631_b52860Help
Entry
SS05631_b52860    CDS       T05069                                 

Definition
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sino  Sinorhizobium sp. CCBAU 05631
Pathway
sino03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sino00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    SS05631_b52860
Enzymes [BR:sino01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SS05631_b52860
DNA repair and recombination proteins [BR:sino03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SS05631_b52860
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ASY59378
UniProt: A0A249P0C8
LinkDB All DBs
Position
pSS05631b:292293..294929
Genome map
AA seq 878 aa AA seqDB search
MADNLSKYRAKRDFKKTSEPSGKAQVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTRGPSLDPSDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRKSPEE
ALRKGDFKFTLLGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHRDEHSVEENGAAILEENA
TSVASGRGMEQIAEGKGRKPRPFMMANADVEADAVWDSKHGLAADERKKRSRKNIATSTT
VDLPGFVAPQLCETLARPPAGDDWLHEIKFDGYRIQMRVAQGKVTLKTRKGLDWTAKYPE
IADAASELPDCIIDGEICALDDNGAPDFAALQAALSEGKTANLVYFAFDLLFGGGEDLRS
MRLIERKKRLEDFLAAGSDDPHIRYVEHFESGGDAVLRSACKLSLEGIVSKQMDAPYQSG
RTDTWAKSKCRAGHEVVIGGYARTNGKFRSLLVGVHRGDHFVYVGRVGTGFGAEKVERFV
PKLKALETSKSPFTGIGAPKKEKEVTWLKPELVAEIEFADWTADGLVRQAAFKGLREDKP
AAEVETERPATPTKTDTPEPAPSAKTRAVRRKGAKAEVMGVLISSPDKALWPDAGDGEPV
TKEDLARYHEAVGTWLIEHVRGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKVFGD
KKPYLQIDRIEGLAAIAQIGGIELHPWNCEPGKPEVPGRLVFDLDPGPDVPFAAVTAAAR
EMRDRLDALGLVSFCKTTGGKGLHVVTPFTVNKRKPLSWTEAKGFAHDVCEQMARDNPDL
YLIKMSKSLRSGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLNWTQVKSDLDPKRFT
LRTVPALLAKTTAWQDYCDGERPLEQAIKRLGKSGRAA
NT seq 2637 nt NT seq  +upstreamnt  +downstreamnt
atggctgacaatctttcgaaataccgcgccaaacgcgatttcaagaagaccagcgaaccg
agcggtaaggcgcaggtcaagccatcgaaccgccgccgcttcgtgatccagaagcacgac
gccacgcggcttcactatgacctcaggctcgagctcgacggcgtgttcaaatcctgggca
gtgaccagggggccatcgctcgatcctagtgacaagcggctcgctgtcgaggtcgaggat
cacccgctcgactacggcgacttcgaaggcacgatccccaagggtcaatatggcggcggc
acggtcatgctatgggatcgcggctactgggagccggagggtaggaagtcacctgaagag
gccctgaggaagggcgacttcaagttcacgcttcttggcaagcggctgcatggcagcttc
gtcctagttcggatgcgcaacgatcgcgatggcggcaaacggaccaactggctgctgatc
aagcatcgtgacgaacattcggttgaggagaacggcgcggcgatcctcgaggagaacgcg
acttccgtcgcctccggccgcggcatggagcagatcgcggaaggcaagggccgcaagcca
cgaccgttcatgatggcgaatgcggatgtagaagcggatgccgtctgggacagcaagcac
ggtctggcggctgacgagcgcaagaagagatcgcgcaagaatatcgcgacttccacgaca
gtcgacctgccgggcttcgtcgcgccgcagctctgcgagacgcttgcgcggccgccggcc
ggcgacgactggctgcatgagatcaagttcgacggttatcggatccagatgcgcgtcgcc
cagggcaaggtgacgctgaagacgcgcaagggtctcgactggaccgcgaaatatccagag
atcgccgatgctgcatccgaattgcccgattgcatcatcgatggcgaaatctgcgccctg
gacgacaatggtgcacccgatttcgcagcactccaggccgcgctctcggaaggcaagacc
gctaaccttgtctacttcgccttcgacctgctcttcggtggcggcgaggacttgaggtcg
atgcgattgatcgagcggaagaagcggctcgaagacttcctcgctgccgggagcgatgat
ccgcatatccgctacgtcgaacacttcgaatccggcggtgacgcggtgctgcgctccgcc
tgcaagctgtcgctcgaaggtatcgtctccaagcagatggatgcgccctatcagtcgggc
cgcaccgatacctgggcaaagtcgaaatgccgggctggtcatgaggtggtgatcggtggc
tatgccaggaccaacggcaagtttcgatctcttctggtcggcgttcaccgcggcgatcac
ttcgtctacgtcggccgggtcggcacgggcttcggcgccgagaaggtcgagcggttcgtc
cccaagctgaaggcgttggaaacatcgaagtcacccttcaccgggatcggtgcgccgaaa
aaggagaaggaagtcacctggctgaaaccggagctcgttgccgagatcgagttcgccgac
tggacggccgacggcctagttcgtcaggcagccttcaagggtctgcgcgaagacaagcca
gccgcggaggtcgagactgaacggccggcaacacccaccaagacagacacacccgagccg
gcgccgagcgcaaagacgagggctgtccgccgcaaaggcgcgaaggcagaggtgatgggc
gtcctcatctccagtcccgacaaggcgctctggccggacgccggcgatggcgaaccggtc
acaaaggaggaccttgcccgctatcatgaagctgtcggcacctggctcatcgagcatgtc
aggggcaggccctgctcgatcattcgggcgccggacggcattggcggcgagcaatttttt
cagcgacatgcgatgcccggcacgtccaacctgctcgagctggtgaaagtcttcggcgac
aagaagccctaccttcagatcgaccggatcgaggggctcgcggcgatcgcccagatcggc
ggtatcgaattgcatccgtggaactgcgagcccggcaagccggaagtgcctggtcgtctg
gtgttcgatctcgatcctggtcctgacgtgccgtttgctgctgtgaccgcggccgcgcgc
gagatgcgggatcgcctcgacgcgctcggcctcgtcagcttctgcaaaaccacaggcggc
aagggattgcatgtcgtcacgccattcactgtgaataagcgcaagcctctgtcgtggacg
gaggccaagggtttcgcgcatgacgtttgcgagcaaatggcgcgcgataatcccgatctt
tatctcatcaagatgagcaagagcctcaggagtgggaggatctttctcgactatctccgc
aacgatcgcatggcgaccgccgtggcgccgctgtcgccgcgcgcgcggcccggcgccact
gtctcgatgccgctcaactggacacaggtgaagtccgatctcgacccgaagcgctttacc
cttcgcaccgtgcctgcgctgcttgcgaaaaccactgcctggcaggactattgtgatggc
gagcggccgctcgaacaggcgatcaagcgccttggaaaatccggacgggccgcgtga

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