Ruegeria sp. TM1040: TM1040_0010
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Entry
TM1040_0010 CDS
T00359
Name
(GenBank) Chaperone DnaK
KO
K04043
molecular chaperone DnaK
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TM1040_0010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sit03019
]
TM1040_0010
03110 Chaperones and folding catalysts [BR:
sit03110
]
TM1040_0010
03029 Mitochondrial biogenesis [BR:
sit03029
]
TM1040_0010
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sit04147
]
TM1040_0010
Messenger RNA biogenesis [BR:
sit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
TM1040_0010
Chaperones and folding catalysts [BR:
sit03110
]
Heat shock proteins
HSP70 / DNAK
TM1040_0010
Mitochondrial biogenesis [BR:
sit03029
]
Mitochondrial protein import machinery
Matrix
MMC/PAM proteins
TM1040_0010
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Proteins involved in Fe-S cluster biogenesis
TM1040_0010
Exosome [BR:
sit04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
TM1040_0010
Exosomal proteins of breast cancer cells
TM1040_0010
Exosomal proteins of colorectal cancer cells
TM1040_0010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
Motif
Other DBs
NCBI-ProteinID:
ABF62743
RoseoBase:
TM1040_0010
UniProt:
Q1GKS3
LinkDB
All DBs
Position
complement(10577..12505)
Genome browser
AA seq
642 aa
AA seq
DB search
MSKVIGIDLGTTNSCVAIMDGSQPRVIENAEGARTTPSIVAFTDEERLVGQPAKRQAVTN
PDNTIFGVKRLIGRRFDDSDLAKDKKNLPFAVINGGNGDAWVEAKSEKYSPSQISAFILG
KMKETAESYLGEEVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL
DKAETQTIAVYDLGGGTFDVTILEIDDGLFEVKSTNGDTFLGGEDFDMRIVNYLADEFKK
EHGVDLTKDKMALQRLKEAAEKAKIELSSSSQTEINQPFISMDPSSGQPLHLVIKLTRAK
LESLVGDLIKNSMKPCAAALKDAGLSASDIDEVVLVGGMTRMPKVIEEVTKFFGKEPHKG
VNPDEVVAMGAAIQAGVLQGDVKDVVLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQ
VFSTAEDNQNAVTIRVFQGEREMAADNKMLGQFNLEDIPPAPRGMPQIEVTFDIDANGIV
SVSAKDKGTGKEQKITIQASGGLSDEDIEKMVKDAEDNAEADKERRELIEARNQAESLIH
STEKSIEDHGDKVDPSTIEAIELAIAALKDDLEGDKANAEKIKSGIQNVTEAAMRLGEAI
YKAQAEEGGADEPSAADEDASAGPGDDDIVDAEFEDLDDNKR
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagtgatcgggattgacctcgggaccaccaactcctgcgttgccatcatggac
ggctctcagccgcgcgtgatcgaaaacgccgagggtgcacgcaccaccccttcgatcgtt
gccttcaccgatgaagagcgccttgttggacagcctgcaaaacgccaggccgtgaccaac
ccggacaacaccatctttggtgtgaagcgcctcattggccgtcggtttgacgacagcgac
ctcgccaaggacaagaaaaacctgcccttcgccgtaatcaacggcggcaacggcgacgca
tgggtcgaagcgaagtccgagaagtactccccctcccagatttccgccttcatccttggt
aagatgaaggaaaccgccgagagctatcttggcgaagaagtgacgcaagcggtcatcacc
gttcctgcgtatttcaacgacgcccagcgtcaggccaccaaagacgccggcaagatcgct
ggcctcgaggtgctgcgcatcatcaacgagccgactgcagcggcgctggcctatggcctc
gacaaggccgaaacccagaccatcgcagtctatgaccttggtggcggtacctttgacgtt
accatcctcgagatcgacgatggcctgtttgaagtgaaatccaccaacggtgacaccttc
ctcggtggtgaagacttcgacatgcgcatcgtgaactacctcgcggatgagttcaaaaaa
gagcatggcgtcgacctgaccaaagacaagatggcgcttcagcgtctgaaagaagcggca
gagaaagccaagatcgagctgtcgtcctcttcgcagaccgagatcaaccagccgttcatc
tcgatggacccgtcgtctggccagccgctgcacttggtcatcaaactgacccgcgcaaag
ctcgaaagcctcgtgggcgacctgatcaagaactccatgaagccctgcgccgccgcgctg
aaggatgctggcctgtccgcgtccgacattgacgaggtggttctggtcggtggtatgacc
cgcatgccgaaggtcatcgaagaggtgaccaaattctttggcaaggagccgcacaagggt
gtgaacccggacgaagtggttgccatgggcgccgccattcaggctggtgttctgcagggt
gacgtgaaggacgttgttcttctcgacgtgaccccgctgtcgctcggcatcgaaaccctt
ggtggcgtcttcacccgcctgatcgaccgcaacaccacgatcccgacgaagaagtctcag
gtcttctccaccgccgaggacaaccagaacgccgtgaccattcgcgtattccagggtgaa
cgcgaaatggcagccgacaacaagatgctcggtcagttcaacctcgaagacatcccgccc
gcaccgcgcggcatgcctcagatcgaagtgacctttgacatcgacgccaacggtatcgtt
tcggtgtccgccaaagacaaaggcactggcaaagagcagaagatcaccatccaagcgtct
ggtggcctgtccgacgaggacatcgaaaagatggtcaaggacgccgaggacaatgccgag
gctgacaaggaacgtcgcgagctcatcgaagcacgcaaccaggccgagagcctgatccac
tcgaccgagaaatcgatcgaagatcacggcgacaaggttgatccctcgaccatcgaggcg
attgaactggcgattgcggcgctcaaagacgatctcgaaggcgacaaggcgaatgccgag
aagatcaaatccggcatccagaacgtcaccgaagcggcgatgcgtctgggcgaggcgatc
tacaaggcacaagccgaagaaggtggcgcggacgagccctctgccgctgatgaagatgct
tccgcaggccccggtgacgacgacatcgttgatgccgagtttgaagatctggacgacaac
aagcgctaa
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