Ruegeria sp. TM1040: TM1040_1967
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Entry
TM1040_1967 CDS
T00359
Name
(GenBank) putative CheA signal transduction histidine kinase
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TM1040_1967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sit03019
]
TM1040_1967
03009 Ribosome biogenesis [BR:
sit03009
]
TM1040_1967
Enzymes [BR:
sit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TM1040_1967
Messenger RNA biogenesis [BR:
sit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TM1040_1967
Ribosome biogenesis [BR:
sit03009
]
Prokaryotic type
rRNA processing factors
TM1040_1967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Snf7
Motif
Other DBs
NCBI-ProteinID:
ABF64699
RoseoBase:
TM1040_1967
UniProt:
Q1GF67
LinkDB
All DBs
Position
2070774..2072972
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AA seq
732 aa
AA seq
DB search
MVQNNKVLTVSYGTFSCTLEGFEDSFDTMKAIAEYFRDLAADDRYFGAEPPQPDAEMMAR
IAQREIARQVEARSGEGGIHLRAAAPATAPTAAPAPAPASVAPPAPAAPEEDQSTAPAVA
RTDDLTSDSPRTTPEAAPQMQPAVLNEAPDAPVATVPVDVSEDVAEPEAEDTVPAADSIA
AKLQRIRAVVAKAPHQDEEFIEDEHADAVETDASDLAAETTAELYEDHYDGEEDAEDADV
ASDEETVSDILDRLDLTGTRRKAETDDRADTAHGDTAEEPAPSQEDTEAQAEAQPAAAER
PQRPRTIRVMPKRATSETEGPAEAPSDTPETASTAKATPKPAPPLRLGDDTAVSVPSGEQ
PSNEQAASEAAPSEPVRPRRPVRGRVIRVKRAQADESLIDATAEDVTPRQRPEATPPVST
SLSEDDEAELMAELAAVEAELMASTTDTDEVPEQDETDGEDAFDDGGPAVAPAAPAAPRA
TERPAREILTSRGGSPDGDVSRLMAAADDRLSDEDAASSRETYNQLRAAVAAAQADPGDS
DEQRREARTRAFRDDLASVVRPSRAASAEPGSGRGTATSRPAPLKLVAEQRIDPAPQENT
PTMAPAAASAPVRPRRVSSVLAASEEEDAAPATRQQDGAFASYASEKGAVELHELLEAAA
SYMSFVEGRESFSRPQLINKVRTLDGQSDFNREDSLRFFGQLLREGKLKKASNGRFSVSS
QIGFRPGNRAAG
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggtacagaataacaaagttttaaccgtttcttatggaacgttttcatgcacccttgag
gggtttgaagactcctttgacacgatgaaagcgattgccgagtactttcgtgatctggct
gcggatgaccgctatttcggggccgaaccgcctcagcccgacgccgagatgatggcccgg
atcgcccagcgcgaaatcgcccgccaggttgaggcccgaagtggcgaaggtggcatccac
ctgcgcgccgccgcacctgcaactgcacccactgccgcgcctgcgcccgctccagcctcc
gtcgcgcccccggcacccgctgcgcccgaagaagatcaaagcaccgccccagccgtcgcc
cgcactgatgatctgacgtctgattcgcctcggaccacacccgaggccgcgcctcagatg
caacctgcggttctaaatgaggcccccgacgcgcccgtagcaacagttcctgttgatgtc
tcagaagatgtcgccgagcccgaggccgaggacacggttcctgccgccgacagcattgcc
gccaaactgcaacgcatccgcgccgtggtggccaaggcaccgcatcaggatgaagagttc
atcgaggacgaacatgccgatgcggttgaaaccgacgcgagcgatctcgcagcagagacc
accgccgagctctacgaggaccactacgacggggaagaggacgctgaggacgccgatgtg
gcctccgatgaggaaaccgtcagcgatattctcgaccgtctggatctgaccgggacgcgc
cgcaaggctgaaacggatgatcgcgcggacaccgcgcatggcgacacggcagaagagccc
gctccgtcacaggaagacaccgaagcgcaagcagaggcgcaacctgccgccgccgagcgc
cctcagcgtccgcgcaccattcgcgtgatgcccaaacgcgcaacctccgagaccgaaggc
cccgccgaggcgccctccgacactcccgagaccgccagcaccgctaaagcaacgccgaaa
cccgctccccccctccggttgggggatgacacggctgtctcggtaccgtctggcgagcag
ccctcgaacgaacaagcggcgtctgaggccgcgcccagcgagcctgtccgcccgcgccgt
ccggtgcgtggccgggtcatccgcgtcaagcgggcacaggccgatgagagcttgattgat
gccaccgctgaggacgtgaccccgcgacagcgccctgaggcaacgcctccggtctccacc
agcctctccgaggatgacgaggcagaactgatggcggaactggcggctgtcgaggcggaa
ctcatggcctctaccacagatacggatgaggttcccgagcaggacgagaccgacggtgaa
gatgcctttgacgatgggggccccgctgtcgcgccagccgcaccggcagcaccgcgcgcc
accgagcgcccggcgcgtgagatcctcacctctcgaggcggctcgcccgatggcgatgtg
tcgcgcctgatggcggctgcggatgatcgcctgagcgatgaagatgcggcctcctcccgg
gagacctataaccagctgcgcgcagcggtcgccgcggcccaggcggacccgggcgactcc
gacgagcagcgccgtgaagcccgcacacgggccttccgcgatgatcttgcaagcgtggtg
cgcccatcccgtgcggcctcggcagaacccggctctggccgtggtaccgcgaccagccgt
ccagcgccgctcaagctggtggccgagcaacgtattgatcccgcaccgcaagagaatacg
ccgaccatggcgcccgccgccgcaagtgcaccggtgcgcccacgccgggtctccagcgtg
ctggccgcctccgaagaagaagacgcagcgcccgcgacccgtcagcaagacggtgccttt
gcgagctatgccagcgagaaaggcgcagtggagctgcatgaacttcttgaagccgccgcc
tcctacatgagctttgtcgaaggccgcgagagcttctcgcgccctcagttgatcaacaag
gtgcgcacgcttgacgggcagagcgatttcaaccgtgaagacagcctgcgcttttttggt
caattgctgcgcgaagggaaactgaagaaagcctccaacggacgcttttcggtctcctcg
cagatcggctttcgcccgggcaatcgcgccgcgggctga
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