KEGG   Ruegeria sp. TM1040: TM1040_1967
Entry
TM1040_1967       CDS       T00359                                 
Name
(GenBank) putative CheA signal transduction histidine kinase
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
sit  Ruegeria sp. TM1040
Pathway
sit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TM1040_1967
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sit03019]
    TM1040_1967
   03009 Ribosome biogenesis [BR:sit03009]
    TM1040_1967
Enzymes [BR:sit01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     TM1040_1967
Messenger RNA biogenesis [BR:sit03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     TM1040_1967
Ribosome biogenesis [BR:sit03009]
 Prokaryotic type
  rRNA processing factors
   TM1040_1967
SSDB
Motif
Pfam: Snf7
Other DBs
NCBI-ProteinID: ABF64699
RoseoBase: TM1040_1967
UniProt: Q1GF67
LinkDB
Position
2070774..2072972
AA seq 732 aa
MVQNNKVLTVSYGTFSCTLEGFEDSFDTMKAIAEYFRDLAADDRYFGAEPPQPDAEMMAR
IAQREIARQVEARSGEGGIHLRAAAPATAPTAAPAPAPASVAPPAPAAPEEDQSTAPAVA
RTDDLTSDSPRTTPEAAPQMQPAVLNEAPDAPVATVPVDVSEDVAEPEAEDTVPAADSIA
AKLQRIRAVVAKAPHQDEEFIEDEHADAVETDASDLAAETTAELYEDHYDGEEDAEDADV
ASDEETVSDILDRLDLTGTRRKAETDDRADTAHGDTAEEPAPSQEDTEAQAEAQPAAAER
PQRPRTIRVMPKRATSETEGPAEAPSDTPETASTAKATPKPAPPLRLGDDTAVSVPSGEQ
PSNEQAASEAAPSEPVRPRRPVRGRVIRVKRAQADESLIDATAEDVTPRQRPEATPPVST
SLSEDDEAELMAELAAVEAELMASTTDTDEVPEQDETDGEDAFDDGGPAVAPAAPAAPRA
TERPAREILTSRGGSPDGDVSRLMAAADDRLSDEDAASSRETYNQLRAAVAAAQADPGDS
DEQRREARTRAFRDDLASVVRPSRAASAEPGSGRGTATSRPAPLKLVAEQRIDPAPQENT
PTMAPAAASAPVRPRRVSSVLAASEEEDAAPATRQQDGAFASYASEKGAVELHELLEAAA
SYMSFVEGRESFSRPQLINKVRTLDGQSDFNREDSLRFFGQLLREGKLKKASNGRFSVSS
QIGFRPGNRAAG
NT seq 2199 nt   +upstreamnt  +downstreamnt
atggtacagaataacaaagttttaaccgtttcttatggaacgttttcatgcacccttgag
gggtttgaagactcctttgacacgatgaaagcgattgccgagtactttcgtgatctggct
gcggatgaccgctatttcggggccgaaccgcctcagcccgacgccgagatgatggcccgg
atcgcccagcgcgaaatcgcccgccaggttgaggcccgaagtggcgaaggtggcatccac
ctgcgcgccgccgcacctgcaactgcacccactgccgcgcctgcgcccgctccagcctcc
gtcgcgcccccggcacccgctgcgcccgaagaagatcaaagcaccgccccagccgtcgcc
cgcactgatgatctgacgtctgattcgcctcggaccacacccgaggccgcgcctcagatg
caacctgcggttctaaatgaggcccccgacgcgcccgtagcaacagttcctgttgatgtc
tcagaagatgtcgccgagcccgaggccgaggacacggttcctgccgccgacagcattgcc
gccaaactgcaacgcatccgcgccgtggtggccaaggcaccgcatcaggatgaagagttc
atcgaggacgaacatgccgatgcggttgaaaccgacgcgagcgatctcgcagcagagacc
accgccgagctctacgaggaccactacgacggggaagaggacgctgaggacgccgatgtg
gcctccgatgaggaaaccgtcagcgatattctcgaccgtctggatctgaccgggacgcgc
cgcaaggctgaaacggatgatcgcgcggacaccgcgcatggcgacacggcagaagagccc
gctccgtcacaggaagacaccgaagcgcaagcagaggcgcaacctgccgccgccgagcgc
cctcagcgtccgcgcaccattcgcgtgatgcccaaacgcgcaacctccgagaccgaaggc
cccgccgaggcgccctccgacactcccgagaccgccagcaccgctaaagcaacgccgaaa
cccgctccccccctccggttgggggatgacacggctgtctcggtaccgtctggcgagcag
ccctcgaacgaacaagcggcgtctgaggccgcgcccagcgagcctgtccgcccgcgccgt
ccggtgcgtggccgggtcatccgcgtcaagcgggcacaggccgatgagagcttgattgat
gccaccgctgaggacgtgaccccgcgacagcgccctgaggcaacgcctccggtctccacc
agcctctccgaggatgacgaggcagaactgatggcggaactggcggctgtcgaggcggaa
ctcatggcctctaccacagatacggatgaggttcccgagcaggacgagaccgacggtgaa
gatgcctttgacgatgggggccccgctgtcgcgccagccgcaccggcagcaccgcgcgcc
accgagcgcccggcgcgtgagatcctcacctctcgaggcggctcgcccgatggcgatgtg
tcgcgcctgatggcggctgcggatgatcgcctgagcgatgaagatgcggcctcctcccgg
gagacctataaccagctgcgcgcagcggtcgccgcggcccaggcggacccgggcgactcc
gacgagcagcgccgtgaagcccgcacacgggccttccgcgatgatcttgcaagcgtggtg
cgcccatcccgtgcggcctcggcagaacccggctctggccgtggtaccgcgaccagccgt
ccagcgccgctcaagctggtggccgagcaacgtattgatcccgcaccgcaagagaatacg
ccgaccatggcgcccgccgccgcaagtgcaccggtgcgcccacgccgggtctccagcgtg
ctggccgcctccgaagaagaagacgcagcgcccgcgacccgtcagcaagacggtgccttt
gcgagctatgccagcgagaaaggcgcagtggagctgcatgaacttcttgaagccgccgcc
tcctacatgagctttgtcgaaggccgcgagagcttctcgcgccctcagttgatcaacaag
gtgcgcacgcttgacgggcagagcgatttcaaccgtgaagacagcctgcgcttttttggt
caattgctgcgcgaagggaaactgaagaaagcctccaacggacgcttttcggtctcctcg
cagatcggctttcgcccgggcaatcgcgccgcgggctga

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