Ruegeria sp. TM1040: TM1040_3190
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Entry
TM1040_3190 CDS
T00359
Name
(GenBank) formate dehydrogenase alpha subunit
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit00630
Glyoxylate and dicarboxylate metabolism
sit00680
Methane metabolism
sit01100
Metabolic pathways
sit01120
Microbial metabolism in diverse environments
sit01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
TM1040_3190
09102 Energy metabolism
00680 Methane metabolism
TM1040_3190
Enzymes [BR:
sit01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
TM1040_3190
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Molydop_binding
Fer2_4
Molybdop_Fe4S4
Fer4_7
Fer4
Fer4_8
Fer4_9
Fer4_21
Fer4_10
Fer4_6
Fer4_2
Fer4_17
Fer4_16
Fer4_4
Fer2
Fer4_15
Fer4_22
Fer4_13
Fer4_18
Spt4
Motif
Other DBs
NCBI-ProteinID:
ABF62164
RoseoBase:
TM1040_3190
UniProt:
Q1GMF2
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Position
mega:complement(181083..183857)
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AA seq
924 aa
AA seq
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MSDKITFTLDGAQVTADAGMTIWEVANGRGLKIPHLCHKPQPGYRPDGNCRACMVEIEGE
RTLAASCIREPSEGMVVTTNNARAENARKMVMELLVADQPAQEVAHDKSSHMWDMAELNG
VSESRFPKLEEGHIPLLDDSHVAMSVNLDACISCGLCVRACREVQVNDVIGMAGRGHNAY
PTFDIADPMGESSCVACGECVQACPTGALMPATVVDENQVGDRKDFDSETESVCPFCGVG
CKVSLKVKDGKVKYVEGINGPANEGRLCVKGRFGFDYIHHPHRLTKPLIRREDAPDKGLN
VDPGNLMTHFREASWDEAMDLAAKGLIKLRDADPKSVAGFGSAKCTNEEAYLFQKFIRQG
FKHNNVDHCTRLCHASSVAALIENVGSGAVTATFNEIENADVAIIIGANPIENHPVAATY
FKQFTKRGGKLIVMDPRGVGMRRYADEMLQFRPGADVSMLNAIMNVIVEEELYDSQYIHR
WTENWEAEKEHLRQFTPEKMSEICGIEPEQLRRVARTFAGAEAGMIFWGMGVSQHIHGTD
NSRCLISLALMTGNVGKPGAGLHPLRGQNNVQGASDAGLIPMFLPDYQTVTSDDVRRSFT
DVWGGGDFSNEKGLTVTEIVDQVYAGNIKGMYIQGENPAMSDPDADHAREAFAKLDLMIV
QDIFLTETANFADIILPASTLYEKNGTVSNTNRQVQRVRPAVTPPGEAREDWKITVELAQ
RIGLPWAYSDVSEVFAEMKLNMKSLDNITWERLEVETITYPSLHETDPGQAIVFGDGFPR
PEGRARFTPASVIPPDEAPDADFPMIMTTGRQLEHWHTGSMTRRSLVLDAVEPEANCSLH
PRTLRTLGVEPGEMVRLSTRRGSIEIMARADRAVAEDMVFVPFAYVEAAANILTNPAIDP
YGKIPEFKFSAVRVEKAEGQIAAE
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgtccgataaaatcacctttacgctcgacggcgcgcaagtcaccgccgacgctggcatg
accatctgggaagtcgccaatggccgcggcctcaagatcccgcatctctgccacaagccg
cagcccggctatcgccccgacggcaattgccgcgcgtgcatggtcgagatcgagggcgag
cgcacgcttgcggcctcctgcattcgcgagcccagtgagggcatggttgtcaccaccaac
aatgcacgcgccgaaaacgcgcgaaagatggtgatggagctgctggttgcggatcagccc
gcgcaggaggttgcgcatgataagtcctcgcatatgtgggatatggcagagttgaacggg
gtttcggagtcgcgctttcccaagctcgaagaggggcacatcccgcttttggatgacagc
catgtcgccatgagcgtaaaccttgatgcctgtatctcttgcgggctctgcgtgcgcgcc
tgccgtgaagtgcaggtgaacgacgtgattggtatggcgggccgggggcacaatgcctat
ccgacctttgatattgccgacccgatgggcgagtcctcctgcgtggcctgcggcgaatgc
gtgcaggcctgcccgacgggcgcactgatgcccgcgaccgtggtggatgaaaaccaggtg
ggcgatcgcaaggactttgattcagaaaccgaaagcgtctgccccttctgcggggtcggc
tgcaaagtctcgctcaaggtgaaagatggtaaggtcaaatatgtcgagggcatcaatggc
cccgcgaacgaaggccgtctctgcgtgaaaggtcgtttcggctttgactatatccaccat
ccgcaccgcctcaccaaaccactgatccgtcgcgaggatgcaccggacaaagggctgaat
gtcgatcccgggaacctgatgactcacttccgcgaggcaagctgggatgaggcgatggat
ctggccgcgaaaggtctgatcaagctgcgggacgcagaccccaaatctgtcgcaggtttt
gggtcggcaaaatgcaccaatgaagaagcctatctcttccagaagtttattcgtcagggc
ttcaagcacaacaacgtcgatcactgcacccgcctgtgtcatgcctcttctgtggcggca
ctgatcgagaacgtgggctcgggggctgtgaccgcaaccttcaacgagatcgagaacgcg
gatgtagcgatcatcatcggcgccaacccgattgagaaccaccctgttgctgcgacctat
ttcaagcagttcaccaaacgcggtggcaagctgattgtgatggatccgcgcggtgtcggc
atgcgccgatatgcggacgagatgctccagttccgtccaggtgccgatgtgtcgatgctc
aatgcgatcatgaacgtgatcgtggaagaagagctctatgacagccagtatatccaccgc
tggaccgaaaactgggaggctgaaaaagagcacctgcgccagttcacgccagaaaagatg
tcggaaatctgcggcatcgagccagagcagctgcgccgtgtggcccggacctttgcaggt
gccgaggcggggatgatcttctggggcatgggcgtcagccagcacattcacggcactgac
aactcgcggtgcctgatctcgctggccttgatgacaggcaatgtcggtaaacccggtgcg
ggcctgcaccccttgcggggtcagaacaatgtgcagggtgcgtcggatgcgggtctcatt
ccgatgttcctgccggactaccagactgtcacctctgacgatgtccgtcgcagctttaca
gatgtctggggtgggggcgatttctccaatgagaagggcctcaccgtgacagaaatcgtg
gatcaggtttatgcgggcaatatcaaaggcatgtacattcagggcgagaaccctgccatg
tccgaccctgacgccgatcacgcgcgcgaggcctttgccaagctcgacctgatgatcgtg
caggatattttcctgaccgagacggcgaatttcgccgacatcatcctgcccgcctcgacc
ctttatgaaaagaacggcacggtgtccaataccaaccgtcaggtgcagcgcgtgcggcct
gccgtcacccctccgggtgaggcgcgcgaggattggaagatcaccgtagaattggcacag
cggatcggtttgccttgggcctatagtgatgtttcagaggtttttgccgagatgaaactc
aatatgaagtcgctcgacaatatcacctgggaacgtctggaggtggagaccatcacctat
ccctcgctgcatgagaccgacccgggtcaggcgattgtgtttggcgatggcttcccgcgc
cccgaggggcgggcgagatttacgcctgcctcggtgatcccgccggatgaggccccggat
gcggacttcccgatgatcatgaccacggggcgtcagctcgaacattggcatacgggctcc
atgacgcggcgctcgcttgtgttggatgcggttgagccggaggcaaactgttcgttgcat
ccgcgtaccctgcgcacccttggggttgagccgggcgagatggttcgactgtccacgcgt
cgcggctcgatcgagatcatggctcgtgcggaccgcgcggtggccgaagacatggtcttt
gtgccctttgcctatgtcgaggcagcggccaatatcctgaccaacccggcaatcgatccc
tacggcaagatccccgagttcaagttctcggctgtgcgggttgagaaggcagaagggcag
atcgcagccgagtga
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