Shewanella japonica: SJ2017_1743
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Entry
SJ2017_1743 CDS
T04959
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sja
Shewanella japonica
Pathway
sja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJ2017_1743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sja03019
]
SJ2017_1743
03009 Ribosome biogenesis [BR:
sja03009
]
SJ2017_1743
Enzymes [BR:
sja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SJ2017_1743
Messenger RNA biogenesis [BR:
sja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SJ2017_1743
Ribosome biogenesis [BR:
sja03009
]
Prokaryotic type
rRNA processing factors
SJ2017_1743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ARD22056
LinkDB
All DBs
Position
complement(2088288..2091590)
Genome browser
AA seq
1100 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGTITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAAMSELTVPNGMGLIVRTAGVGKDAAEL
KWDLKVLQHHWEAIQEAAQSKPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEA
KQHIGLVRPDFVERVKRYESEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHLDRARVQLGRISRFGLMEMSRQRLRPSLGESAAHLCPRCHGQGTIRSTESLAL
SILRLMEEEAIKENTSQIEAVVPVDVAAFLLNEKRKAIRITEERHNVEVYVIPDSHMTTP
DYRVSRLRSDDEVVESSYKRVEKPEAKLYEPRKLERTEAPQPAIKGFGTPKAAAKPAVEA
KPKATESAPSEPGFFAKMVSAISKLFSSDEPAKKESKQSDKNRKEGQNNRRNRRNDSRRN
DNRRNRNDNRSDNRNDADNKGRDNKGRNKKADRDVANKEQQEKRQSKNDQRNKANKPADK
SRPEGEKSPKQEAARERRQRRNMRRKVRIENEQSEAKLNEVEVAENAKSADVTAKPNAEQ
SAKPTRTRRPRKDNKAKVETEANAESVAAKPSLDATVSKVEASAEVPTETTVETKVEPKA
ETVVETTDVVAATNNAASEATAPAKVESSDASDEATSEDNEEKQGQRRSRRSPRHLRAAG
QRRRRDEDETAPSAAVFTPVDELEKQLDAEQAAVEVTTEPAPAVEAPTSQTVETETPAVT
DDKVEVTQEETSTDTQKVVEASEKVETPVESASEVEVPVEAPVAETADVIETAPQAETSN
NAVKPTEVEANVEVEAKVEVKAEPAKAETVKTEPVKAETVTKDNSIASAPMAKPAAIERK
VVTAPVATETKTEAKTDAPAKKTAASRFGSMVMSETTKPVSEVRQQQAVPKGREYQKSQP
DAETVKSKVANSASSDTTKA
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaattaatgcaactcaatcggaagagttgcgtgttgccctagtagat
gggcaacaattgtatgatctggatatcgaaagcccaggccatgaacaaaaaaaatcaaat
atctataaaggcaccattactcgcgtagaaccttcattagaagctgcgtttgttgattac
ggcgctgaccgtcacggtttccttccattaaaagaaatcgctcgcgaatacttccctaaa
ggatactctttccaaggccgcccaaatatcaaagaagtggtatctgaaggccaagaagtt
atcgttcaaatcgataaagaagaacgtggtaataaaggcgctgccttaacaacgtttatc
tctcttgctggctcttatttagttctgatgccaaataatcctcgtgctggcggcatttcg
cgtcgtatcgaaggtgatgagcgtactgagcttaaagcggctatgtcagagttaactgta
ccaaatggtatgggtctgattgtacgtactgctggtgttggtaaagatgctgctgaatta
aagtgggacttaaaagttttacaacaccactgggaagcaattcaagaagcagctcagagt
aaacctgcgccatttttgattcatcaagaaagtaacgtgattgttcgtgcaatccgtgat
tacttacgtcgtgatgtgggcgaaatactaattgaccatccacgtatctatgaagaagca
aaacagcatattggtttagtacgccctgatttcgttgaacgtgttaagcgttacgagtct
gaagtaccattgttcacacacttccaaatcgaatctcaaattgagtccgcattccaacgt
gaagtgcgcttgccttctggtggttcaatcgtaattgacccaacggaagcactaacttca
atcgatatcaactcagcccgtgcaacaaaaggcggcgatatcgaagaaacagcgttaaac
accaacttagaagcggcagacgaaattgcgcgtcagttacgtttacgtgatttaggtggt
ttagtcgtcatcgacttcattgatatgacgccagttagacaccaacgtgaagttgagaat
agaatgcgtgatgcggttcatttagaccgtgctcgtgttcagcttggccgtatttcacgt
tttggcttaatggaaatgtctcgtcaacgcctacgcccttctcttggcgaatcagcagcg
catttatgtccccgctgtcatggccaaggtacaattcgtagtactgagtcattagcgctt
tctattcttcgtttaatggaagaagaagccattaaagagaacacgtctcaaattgaagct
gttgttcctgttgatgttgctgcgttcttattaaatgaaaaacgtaaagcaattcgcatt
acagaagaacgtcacaatgttgaagtgtatgtcattcctgattctcacatgacaacacct
gactaccgtgtatctcgtttaagaagcgacgatgaagtcgttgaatcaagctacaagcgt
gtagaaaagcctgaagctaaattatacgagccacgcaaacttgaacgtactgaagcgcct
caacctgcgattaaaggtttcggtacgccgaaagctgcagcaaaacctgctgtcgaagca
aaaccaaaagcaacggaatcagcgccgtcagagcctggtttcttcgctaaaatggtttct
gctatcagcaagctattctcatcagatgaacctgctaagaaagaatcgaagcagtctgat
aagaatcgcaaagaaggtcaaaataatcgccgtaaccgtcgtaatgactctcgccgaaat
gacaaccgtcgcaaccgtaacgataaccgcagtgataatcgtaatgatgctgacaacaaa
ggcagagacaacaaaggccgtaataagaaggctgacagagatgttgcaaataaagagcaa
caagaaaaacgtcagtctaaaaacgaccaacgtaacaaggctaacaagcctgcagataag
tctcgcccagaaggagagaagtctcctaagcaagaagctgcaagagagcgtcgtcaacgt
cgtaatatgcgtcgtaaagttcgtatcgagaacgaacaaagtgaagcaaaactaaatgaa
gttgaagtagctgaaaatgctaaatctgctgacgtaactgcaaagccaaatgcggagcaa
tcagctaaaccaacacgcactcgtcgcccaaggaaagacaacaaggcgaaagttgaaact
gaagcgaatgctgaatctgtagctgctaaaccctcattagatgccacggtatctaaagtt
gaagccagcgcagaagttccaactgaaaccactgttgaaactaaggttgagccaaaagct
gaaactgttgttgaaacaactgacgttgtagctgcaacaaataatgcagcctctgaagca
actgctcctgctaaagttgaatcatcggacgcttcagatgaagcaacctcagaagacaac
gaagagaaacaaggtcaacgtcgcagccgtcgtagcccacgccatcttcgtgcagctgga
caacgtcgtcgccgtgatgaagatgaaacagcaccttctgcagccgtatttacgcctgta
gatgaactagaaaagcaacttgatgctgaacaagctgcagtagaagtcactacagagcca
gctcctgctgttgaagctcctacttctcaaactgtagaaactgaaacaccagctgtgact
gacgataaagttgaagttacgcaagaagaaacgtcaactgacactcaaaaagttgtcgag
gcttcagaaaaggttgagacgcctgttgaatcagctagtgaagttgaagtgccagtcgaa
gcacctgtagctgaaactgcagacgttatcgaaacagcaccgcaagctgaaacatcaaac
aatgcagttaaacctaccgaagttgaagctaatgttgaagttgaagctaaggttgaagtt
aaggctgagcctgcaaaagctgagactgtaaaaactgaaccagtaaaagctgaaacagta
actaaagataattcaattgcatcagcaccaatggctaagcctgctgcaatcgaacgtaaa
gtggttaccgcaccagttgctaccgaaactaaaacagaagcgaaaactgatgcaccagct
aaaaaaactgctgctagtcgctttggttcaatggtaatgtcagaaacaactaaacctgta
tctgaagtgcgtcagcagcaagctgtaccaaaaggtcgtgaataccaaaaatcacaacct
gatgctgaaacggtaaaatcaaaagtagctaacagtgcatcttctgataccactaaagca
taa
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