Sphingobium indicum UT26S: SJA_C1-10130
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Entry
SJA_C1-10130 CDS
T01201
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sjp
Sphingobium indicum UT26S
Pathway
sjp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SJA_C1-10130 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjp03021
]
SJA_C1-10130 (rpoC)
03400 DNA repair and recombination proteins [BR:
sjp03400
]
SJA_C1-10130 (rpoC)
Enzymes [BR:
sjp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SJA_C1-10130 (rpoC)
Transcription machinery [BR:
sjp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SJA_C1-10130 (rpoC)
DNA repair and recombination proteins [BR:
sjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SJA_C1-10130 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Vsr
Motif
Other DBs
NCBI-ProteinID:
BAI95847
NITE:
SJA_C1-10130
UniProt:
D4YZR5
LinkDB
All DBs
Position
1:complement(1010203..1014459)
Genome browser
AA seq
1418 aa
AA seq
DB search
MNELTNFANPIQKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKQVLLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLADMQEVHQALYA
KAVTLHSKIISRVPQTDEAGNQYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRHAFQAGISFGKDDMVIPDSKTAMVDETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIRAQPKDPNTGRMAPINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTIVEEDCGTDKALEMKAIVQGGSVIASLGERILGRTT
AQDIVDSKDGSVIVPIGTLLDEALVAQIEAIGTQSVKIRSPLICESKMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLEAMSDGTIELRDMPT
ITDKNGRRLSLARNGEIAIIDSEGRERETHRLPYGATILFADGDAVKKGERFAEWDPFTM
PVITEKPGIVKYQDLIDGKTLTEQTDEATGIAQRVVTEHRGSARTKEDLRPRLTLLDDQS
GEAARYMLAVGATLSVDDGAQVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGSEPVEYLIPKSKVIDVQEGDYVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEITVSGDTT
LLVGEQVDREEMEEINAKLQPGFQPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRMRVAASSRDAAMRAALRASSQVDLIAP
KTAAEEHAAELRQGPEAAIGDDPLAVVQGEDFTTEDME
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgacgaacttcgccaatccgatccagaagccggaaaccttcgaccagatc
cagatcggccttgcctctccggagcgcatccgcagctggtccttcggcgagatcaagaag
ccggaaaccatcaactaccgcaccttcaagccggaacgggacggcctgttctgcgcccgt
atcttcggtccgatcaaggactatgaatgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgagaagtgcggtgtcgaagtcacggtgtcgaaggtccgccgcgag
cggatgggccatatcgaactcgccgccccggtcgcgcatatctggttcctgaagtcgctc
cccagccgcatcggcctgctgctcgacatgcagttgaagcagcttgagcgcgtcctctac
ttcgaatcctacatcgtcaccgagccgggcctgactccgctggagaagtaccagcttctg
accgaggacgaactgctcgacgcgcaggacgaatatggcgaggacgccttctccgccggg
atcggcgcggaggcggtcaagcagatgctgatggacctcgacctggagggcgagaagcag
gtgctgctggacgagttggccgtcaccaagtcggaattgaagcccaagaagatcatcaag
cgcctcaaggtcgttgagagcttcctggaatcgggcaatcggcctgaatggatgatcctg
gacgtggttcctgtgatcccgccggaactgcgcccgctggtcccgctggacggcggccgc
ttcgcgacgtcggacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgtttg
aagcggctgatggaactgcgcgccccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaggcggtcgacgccctgttcgacaatggccgccgcggccgcgtcatcaccggcgcg
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggcccg
gaattgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaagccc
ttcatctacgcccgcctcgacgccaagggtctttccatgaccctgaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctggacgaggtgatccgcgagcat
ccggtgatgctgaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgagccg
gtcctcattgaaggcaaggcgatccagcttcacccgctggtctgctcggccttcaacgcc
gacttcgacggcgaccagatggccgttcacgtgccgctttcgctggaagcgcagcttgaa
gcccgcgtgctgatgatgtcgaccaacaacatcctcagccccgcaaacggcaagccgatc
atcgttccgtcgcaggacatggttctgggcatctattatctgtcgatggagcgcgagggc
gagccgggcgaaggcatgctgctggccgacatgcaggaggtgcatcaggcgctctatgcc
aaggcggtgacgctgcactccaagatcatcagccgggtgccgcagaccgacgaagccggc
aaccagtatatgaagcggtttgaaaccacgccgggccgcatgctgctgggcgaatgcctg
cccaagagccacaaggtgcccttcgacgtcgtcaaccgccttctgaccaagaaggaaatc
ggggacgtcatcgaccaggtctatcgccacaccggccagaaggacacggtgctgttcgcc
gacgccatcatggcgctgggcttccgccacgcgttccaggccggcatcagcttcggcaag
gacgacatggtgatcccggattcgaagaccgcgatggtcgacgaaaccaaggcgctggtg
gccgactatgagcagcaatatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtcgcgaacgccatgatggacgaaatc
cgcgcccagcccaaggacccgaatacgggccgcatggcgccgatcaactccatctacatg
atggcgcattccggtgcccgtggttcgcaggcgcagatgaagcagcttgccggcatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctgaccgtccttgaatatttcaactccacccacggcgcccgcaagggtctggcc
gacaccgcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtcagc
caggattgcaccatcgtcgaagaggactgcggcaccgacaaggcgctggagatgaaggcc
atcgtccagggcggcagcgtcatcgcctcgctgggcgagcgcatcctgggccgcaccacg
gcgcaggacatcgtcgacagcaaggacggttcggtcatcgtgccgatcggcacgctgctc
gacgaagcgctcgtggcgcagatcgaggccatcggcacgcagtcggtgaagatccgcagc
ccgctgatctgcgaaagcaagatgggcgtctgcggcaagtgctacggccgcgacctcgct
cgcggcaccccggtcaatatcggcgaagcggtcggcgtcatcgcggcgcagtccatcggc
gagccgggcacgcagcttaccatgcggaccttccacatcggcggcgcggcgaacttcaac
gaaacgtcgaacctggaagccatgtcggacggcacgatcgaactgcgcgacatgccgacc
atcaccgacaagaacggtcgccgcctcagcctcgcccgcaacggcgagatcgcgatcatc
gactccgagggccgcgagcgcgaaacgcaccgcctgccctacggcgccaccatcctgttc
gcggatggcgatgccgtgaagaagggcgagcgcttcgccgagtgggatcccttcaccatg
ccggtgatcacggaaaagccgggcatcgtgaaatatcaggatctgatcgacggcaagacg
ctgaccgagcagaccgacgaagccaccggcatcgcccagcgcgtggtgacggagcatcgc
ggttccgcccgcaccaaggaggatctgcgtccgcgcctcaccctgctggacgaccagtcg
ggcgaagccgctcgctacatgctggcggtgggcgcgaccctgtcggtggacgacggcgcg
caggtgcaggccggtgacgtgctggcgcgtgtcagccgcgaagcggccaagactcgcgac
atcaccggcggtctgccgcgcgtcgccgaactgttcgaagcccgcaagcccaaggacaat
gcgatcatcgccaaggtgtcgggccgcgtccagttcctcaaggattacaaggcgaagcgc
aagatcgccatcaatcccgaggatggtagcgagccggtcgaatacctcatccccaagagc
aaggtgatcgacgtccaggaaggcgactatgtgaagcgcggcgacaatctgatcggtggt
tcgcccgacccgcacgacattctggaggtgctgggcatcgagccgctggccgaatatctg
gttgccgaaatccaggaagtctatcgcttgcagggcgtgaagatcaacgacaagcacatc
gagacgatcgttcgccagatgctgcaaaaggtcgagatcaccgtgtccggcgacaccacg
ctgctggtgggcgagcaggtcgaccgcgaggagatggaggagatcaacgcgaagctccag
cccggcttccagccggcggagggcaagccggtgctgctcggcatcaccaaggcgtcgctg
cagacccgcagcttcatctcggcggcgtccttccaggaaaccacccgcgtcctcacggaa
gcggcggttcagggcaagaaggacacgctggtgggcctgaaggagaatgtcatcgtcggc
cgcctgatcccggcgggcactggcgcgggcatgaaccgcatgcgggtcgccgcctcgtcg
cgcgacgcggcgatgcgggccgcgctgcgcgcctccagccaggttgatctgatcgcgccc
aagacggctgccgaggagcatgccgccgaactgcgccagggtccggaagccgccatcggc
gacgatccgctggccgtcgtccagggtgaggatttcaccactgaggacatggaataa
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