Sphingobium indicum UT26S: SJA_C1-33240
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Entry
SJA_C1-33240 CDS
T01201
Symbol
dpo1
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sjp
Sphingobium indicum UT26S
Pathway
sjp03030
DNA replication
sjp03410
Base excision repair
sjp03420
Nucleotide excision repair
sjp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SJA_C1-33240 (dpo1)
03410 Base excision repair
SJA_C1-33240 (dpo1)
03420 Nucleotide excision repair
SJA_C1-33240 (dpo1)
03440 Homologous recombination
SJA_C1-33240 (dpo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sjp03032
]
SJA_C1-33240 (dpo1)
03400 DNA repair and recombination proteins [BR:
sjp03400
]
SJA_C1-33240 (dpo1)
Enzymes [BR:
sjp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SJA_C1-33240 (dpo1)
DNA replication proteins [BR:
sjp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SJA_C1-33240 (dpo1)
DNA repair and recombination proteins [BR:
sjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SJA_C1-33240 (dpo1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SJA_C1-33240 (dpo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DprA_N
Ribosomal_60s
HHH_5
HHH
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
BAI98158
NITE:
SJA_C1-33240
UniProt:
D4Z6C6
LinkDB
All DBs
Position
1:3306808..3309594
Genome browser
AA seq
928 aa
AA seq
DB search
MAQNHLYLVDGSGYIFRAYHQLPPLTNRHGQPVGAVYGYTTMLWKLADELGKAEGPTHLA
VVLDKGSHTFRNDMYDAYKANRPPPPEDLVPQFPMIRDATRAFSLPCIEEAGFEADDIIA
SYTKAAVAQGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMTKFGVRPEQLGDV
LALMGDSVDNVPGVPGIGPKTAAKLITEYGGLEAALEAAPRMKKSKMQENLIEHADMARL
SRRLVALHDGMDLPEPLDDLTLKGIPLEPLQAFLEHHGFKSLLARAGAPAAAVAVATAAA
AVTEATAPAAPVLEEEPPIDRSLYETVVTEEALDRWIAAVHAEGLVAVDTETDMLDCVSC
ALVGVSLAVGPNAACYIPVGHGGKDMFAEKPDQLPLPLVLAKLKPLLEDDSVLKIGQNLK
YDITVLRRHGIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAARVHLNHVCISFKDVCGTGR
SQISFAEVPLDKATEYAAEDADVTLRLWRLFKSRIANEGATRVYELVDRPLVGVIAKMEH
EGIKVDREALSRLSAEFTAGIAALEGEIHALAGQPFAIGSTQQLGAILFDKMGYKGGRKG
KSGAYSTDVTILEQLKAQGAEIAGKVLDWRQLSKLKSTYTDALQAQINKDSGRVHTSYSL
SGAQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVP
ALKEAFANGEDIHAATAQQLFGEVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQ
DMISRYYERFPGISLYITDTIEKARSRGYTETLFGRKTWFPRIKAPVQHERQGAERAAIN
APIQGTSADIIKRAMARMGPALAAEGLHRVKMLLQVHDELVFELPEGDVEHAGAVIRRVM
EGAAEPIVKLSVPLGVEIGHGSSWGAAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcccagaatcatctctatctcgtcgacggcagcggctatatcttccgcgcctatcac
cagcttccgccgctcaccaacaggcatgggcagccggtcggcgcggtctatggctatacc
accatgctctggaagctggccgacgaactgggcaaggcggaaggcccgacccatctggcg
gtggtgctggacaagggcagccacaccttccgcaacgacatgtacgacgcctacaaggcg
aaccgcccgccgccgccggaggatctggtcccgcagttcccgatgatccgcgacgccacc
cgcgccttctccctcccctgcatcgaggaagcggggttcgaagcggacgacatcatcgcc
agctataccaaggccgccgtcgcgcagggctggcacgtcaccatcgtcagttccgacaag
gatctgatgcagctcatccagcccggcgtcgacatgtacgacacgatgaagaatgagcgg
cgcggcgccgactatgtgatgaccaagttcggcgtccggcccgaacaattgggcgacgtg
ctggcgctgatgggcgacagcgtcgacaatgtccccggcgtccccggcatcggtcccaag
accgccgccaagctgatcaccgaatatggcgggctggaagcggcgctggaagccgcgccg
cgcatgaagaagtcgaagatgcaggaaaacctgatcgagcatgccgacatggcccgcctg
tcgcgcaggctggtggcgctgcatgacggcatggacctgcccgaaccgctggacgacctg
accctgaagggcattccgctggagccgttgcaggccttccttgagcatcatgggttcaag
tcgctgctcgcccgcgccggcgcgcccgccgccgccgtggcggtcgcgaccgcggcggcc
gccgtcaccgaagccaccgctcccgccgccccggtgctggaggaagaaccgccgatcgac
cgcagcctctacgaaaccgtggtgacggaggaggcgctggaccgctggatcgccgccgtc
catgccgaagggctggtcgccgtcgatacggagacggacatgctggactgcgtgtcctgc
gcgctggtcggggtgagcctggccgtcgggccgaacgccgcctgctacatacccgtcggc
catggcgggaaggacatgttcgcggaaaagcccgaccagctccccctcccgctggtcctc
gcgaaactcaagccgctgctggaggacgacagcgtcctcaagatcggccagaatttgaaa
tatgacatcacggtcctgcgccgccatgggatcgagatcgccccctatgacgacaccatc
gtcatgagcttcgacctcgacgccgggcagagcctggcgggccacggcatggacgaggcg
gccagagtccacctcaaccatgtctgcatcagcttcaaggatgtctgcggcaccggcagg
agccagatcagcttcgccgaagtcccgctcgacaaggcgaccgaatatgccgccgaggat
gcggacgtcacgctgcgcctgtggaggctgttcaagagccgcatcgccaatgagggcgcg
acccgcgtctacgaactggtcgaccggccgctcgtcggcgtgatcgcgaagatggagcat
gagggcatcaaggtcgaccgcgaggcgctctcccgcctctccgccgagttcaccgccgga
atcgcggcgctggagggggaaatccacgcgctggcgggccagcccttcgccatcggatcg
acgcagcaactgggcgcgatcctgttcgacaaaatgggttacaagggcggcaggaagggc
aagtccggcgcctattcgaccgacgtcaccatattggagcaattgaaggcccagggcgcg
gagatcgcgggcaaggtgctggactggcggcagctttccaagctcaagtcgacctatacc
gacgcgcttcaggcccagatcaacaaggatagcggccgggtccacaccagctacagcctg
tccggcgcgcagaccggccgcctgtcgtcgaccgaccccaatctccagaacatcccgatc
cgcacagaggtcggccgccagatccgccacgccttcgtcgcggagccgggcaatgtcatc
ctggcggcggactatagccagatcgaactgcgcctggccgcgcacatggcggacgtgccc
gcgttgaaggaggcgttcgccaatggcgaggacatccatgccgccaccgcccagcaattg
ttcggggaggtcaaccgcgacacgagaggccgggccaagacgatcaacttcgcgatcctc
tacggcatcagccgctggggcctggccgggcggctggagatcagcgccgacgaagcgcag
gacatgatcagccgctattatgagcgtttcccgggcatcagcctctacatcaccgacacc
atcgaaaaggcgcgttcaaggggctatacggagacgctgttcgggcggaagacctggttc
ccgcgcatcaaggcgccggtccagcacgaacgccagggcgcggagcgcgccgcgatcaac
gccccgatccaaggcaccagcgccgacatcatcaagcgcgccatggcccgcatgggaccg
gcgctggcggcggaagggctgcaccgggtcaagatgctgctgcaggtgcatgacgaactg
gtcttcgaactgccggagggcgatgtggagcatgctggcgcggtgatccggcgcgtgatg
gagggcgcggcggagccgatcgtgaaactgagcgtgccgctgggtgtggagatcggccat
ggttcgagttggggggcggcgcattag
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