KEGG   Streptomyces lydicus A02: T261_1305
Entry
T261_1305         CDS       T03756                                 
Name
(GenBank) hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sld  Streptomyces lydicus A02
Pathway
sld03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sld00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    T261_1305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sld03400]
    T261_1305
Enzymes [BR:sld01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     T261_1305
DNA repair and recombination proteins [BR:sld03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     T261_1305
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S
Other DBs
NCBI-ProteinID: AJT62991
LinkDB
Position
1364089..1365021
AA seq 310 aa
MSTEDDTVRVGDRAIAISRPDKELFPDDGITKAELIDYYRAASRPMLTHLRGRPLAMERH
PDGYGGKAFFHKDVPDYFPDWIHRQEVTKEDGTVTMVVCDDAATLAYLANQACITPHPWL
SRVDSLNCPDRLVFDLDPPGDDFETVRWTARKLGDLLTTELGLQPAVMTTGSRGLHLVLL
LDRHTDFDGTRAFARQVADLLADRHPDRLTTEARKNKRRGRLYLDTQRNAYAQTSVAPYA
VRARPHAPVATPLEWDELDDPRLGPQHWTLRTLPDRLSEHGDPWKGLSRCRRSLGPAQRR
LDALLQEDTS
NT seq 933 nt   +upstreamnt  +downstreamnt
gtgagtacggaggacgacaccgttcgagtcggggaccgcgccatcgcgatctcccgtccg
gacaaggaactcttccccgacgacgggatcaccaaggccgaactgatcgactactaccgc
gccgcctcccgccccatgctgacccatctgcgcggacggcccctggccatggaacgccac
cccgacggctacggcgggaaggcgttcttccacaaggacgtccccgactacttcccggac
tggatccaccgccaggaggtcaccaaggaggacgggaccgtcaccatggtggtctgcgac
gacgccgccaccctcgcctacctcgccaaccaggcatgcatcacgccgcacccctggctc
agccgcgtcgacagcctcaactgcccggaccgactggtcttcgacctggatcccccgggc
gacgacttcgagaccgtccgctggaccgcgcgcaagctgggcgacctcctcaccacggaa
ctggggctgcagcctgcggtgatgacaacgggctcgcgcggcctgcacctcgtcctgctc
ctggaccggcacaccgacttcgacggcacgcgcgccttcgcccgccaggtggccgacctg
ctcgccgaccggcaccccgacagactcaccaccgaagcgcgcaagaacaagcgccgcggc
cggctgtacctggacacccagcgcaacgcctacgcccagacctccgtggccccctacgcc
gtccgggcccggccccacgccccggtagccacccctctcgagtgggacgaactcgacgac
ccgcggctcggcccacaacattggaccctgcgcaccctccccgaccgcctgtccgagcac
ggcgacccctggaaagggctgagccgctgccgacgctccctggggcctgcgcagcgccgg
ctcgacgcgctcctccaggaagacacctcctga

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