Sulfurovum lithotrophicum: YH65_01215
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Entry
YH65_01215 CDS
T03877
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
slh
Sulfurovum lithotrophicum
Pathway
slh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YH65_01215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slh03021
]
YH65_01215
03400 DNA repair and recombination proteins [BR:
slh03400
]
YH65_01215
Enzymes [BR:
slh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YH65_01215
Transcription machinery [BR:
slh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YH65_01215
DNA repair and recombination proteins [BR:
slh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YH65_01215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF6108
Motif
Other DBs
NCBI-ProteinID:
AKF24170
UniProt:
A0A7U4LZP8
LinkDB
All DBs
Position
239181..243338
Genome browser
AA seq
1385 aa
AA seq
DB search
MLNSLHSGNRLRVDFSKTPREIEIPNLLQLQQKSYENFLMLGERDRKHSTLERVFRSAFP
IHDQQNRLTLTYKNSEIIKPKYTVRECMERGLTYSVSLKMNIALTIWNRDEKTGEKLDPK
EIKEQAVFVRDIPLMTERTSFVVNGVERVIVNQLHRSPGVIFKEEESTTAGHKLLYSAQI
IPDRGSWLYFEYDAKDILYARINKRRKIPVTILFRALDYTKEDIVKLFYPTKEISIKDNR
FLVKFDPRDFNGRAEYDVKDMDGNVIVNAGKRLTKKKAQQLIENGLEWIEYPLEMLMERH
LATAVIDQESGEVLYDVVAPLDETKLKKMIEQGIESIEIINDLAEGTDRSIINAFIADNE
SLRLLKQTEEIDDENVLSAIRIYKVMRPGEPVTPEAAKAFLKQLFFDPERYDLTEVGRMK
MNHKLGLDIPEYATVLTAEDLINTVKYLIKVKNGQGHIDDRDHLGNRRIRAIGELLGNEL
HNGLVKMQKAIKDKMTTISGTLDELMPHDLVNSKMITNTILEFFSSGQLSQFMDQTNPLS
EVTHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLATYSKVN
EHGFIEAPYKVVKDAQVTNEIVYITATQEEDKCIAPASTKVDENGKIVEDLIETRLNGNI
ELNEAKRVDLIDISPLMISGSAAALIPFLEHDDANRALMGSNMQRQAVPLLKTDAPVVGT
GMEAIVSRDAWEAVKAKRAGKVEKVDAKNIYVMGEDETGVFIDHYPLEKNMRTNQNTTFT
QTPIVKLGDILEAGQVIADGANMDQGELAIGKNIMVAFMPWYGYNYEDAIIVSEKLIRED
TFTSVHTYEKEVEARELKHGTEEITRDIPNIREDELLHLDESGIVQLGTYVKPGMILVGK
VSPKGEIKPTPEERLLRAIFGEKAGHVVNKSLYCPASMEGVVVDIKVFTKKGYEKDARAI
QAYEEEKAILDSDHHDQLLMIDREEILRIAHYLSGQELAKDVTIGDNEFKAGSKIDEETI
KGVNRFALRGVVQSYSDEVQNEYESLKNYFLKQKKRLKNEHEEKLSILEKDDILPSGVTK
LVKIYIATKRKLKVGDKMAGRHGNKGIVSNIVPEIDMPYMEDGRPVEIILNPLGVPSRMN
IGQILEVHLGLVGKRLGEQIQEMFDNKTEDFIKELRAKMIEIADVAKLMNAKEVLSQMSD
EELLAYGRDWSRGVKFAAPVFEGTNQAEFDKLFELAKIESDGKMTLYDGKTGEKMIERVN
VGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGASHI
LKEMLTIKSDDVEGRARAYKALTKGESVPASGVPETMFVLTKELQALGLDAELYESKKEV
ESEDE
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgttaaattctttacattctggtaacagactccgcgttgacttttccaaaaccccaaga
gagattgaaatccccaacctattgcagcttcagcagaaaagttatgaaaactttttgatg
ctgggtgaaagagacagaaaacactctacactcgagcgtgtattcagatcggcttttcct
atccacgatcagcagaacagactcacactgacatacaaaaactcagagatcattaaaccg
aaatataccgttagagaatgtatggagagagggcttacctactctgtatcactgaaaatg
aacatcgcactgaccatttggaacagagacgagaagacaggcgagaagcttgatcctaaa
gagatcaaggaacaggcggtattcgtccgtgatattcctttgatgacagagaggacatca
tttgtcgtcaacggtgtagaaagggttatcgtcaaccagcttcacagatcgcctggtgtt
atcttcaaagaggaagagagtacgacggcaggtcacaagctgctctactccgcacagatc
atacctgacagaggatcatggttgtatttcgagtatgatgcaaaagatattctttacgca
cgtatcaacaaaagaagaaagatccctgtaacgatccttttcagagcgctggattatacc
aaagaggatattgtaaaactcttctatcctaccaaagagatcagcattaaagacaacagg
ttccttgtgaagtttgatccgagagactttaacggaagagcagaatatgatgtgaaagat
atggatggcaatgttattgtcaatgccggtaagagactgacaaagaagaaagcgcagcag
ctcattgagaatggtttagagtggatagaataccctcttgaaatgctgatggagagacat
ctggctacagcagtgatcgatcaggagagtggtgaagtactgtacgacgtggttgctccg
ctggatgaaacgaaactcaaaaaaatgatcgagcagggtatagaaagtatcgaaattatc
aatgaccttgccgaaggtacagatagatccatcatcaatgcgttcatcgctgacaacgaa
agcctcagactgctcaagcagactgaagagatagatgatgagaatgtgctttctgccatc
cgtatctataaagtaatgagaccgggagagcctgtaacacctgaagcagcaaaagcattc
ctgaaacagctcttctttgatccggaaagatatgacctgacagaagtcggtcgtatgaaa
atgaaccacaagcttggtcttgatattcctgagtatgcgacagttttgactgccgaagac
cttatcaatacagtgaagtaccttatcaaggttaagaacggtcaggggcacatcgatgac
agggaccaccttggtaacagacgtatccgtgcgatcggagaactgctcggtaacgaactt
cacaacggtcttgtcaagatgcaaaaagcgatcaaggacaagatgacgacgatctccggt
acactcgatgagttgatgccgcacgaccttgtgaactcgaaaatgatcaccaatacgatc
cttgagttcttttcatcagggcaattgtcacagttcatggaccagacgaacccgctctct
gaagtgacgcacaaaagacgtctttccgcactgggtgagggtggtcttgtcaaagagaga
gccggatttgaggtcagggatgtacacccgacgcactatggacgtatctgtccgatcgag
actccggaaggtcaaaatatcggtctgatcaatacattggcgacctattcgaaagtaaac
gaacatgggttcattgaagcaccgtacaaagtggtaaaagatgcacaggtgaccaatgag
atcgtttatatcacggcgacacaggaagaggacaagtgtatcgcacctgcttctaccaaa
gtagatgagaacggaaagatcgttgaagaccttatcgaaacaagactgaacggaaatatc
gagctgaatgaagcgaagagggtggatcttatcgatatctctccattgatgatctccggt
tcggcagcggcactcattccattcctcgagcatgatgatgcgaaccgtgcactgatggga
tcgaacatgcagcgtcaggcagtacctttgctcaagacagatgcccctgtagtcggtacc
ggtatggaggcgattgtttcacgtgatgcatgggaagcggtcaaggccaaaagagccggt
aaagtagaaaaagtggatgcgaagaacatttatgtcatgggtgaagatgaaaccggtgta
ttcatcgaccattatcctcttgaaaagaatatgagaaccaaccagaatacgacattcacg
cagacaccgattgtcaaactcggagatatcctcgaagccggacaggtcattgccgatggt
gcgaatatggatcaaggtgaacttgcgatcggtaagaacatcatggttgcgttcatgcct
tggtacggatacaactatgaggatgcgatcattgtctcagagaagcttatccgtgaagac
actttcacttctgttcatacctacgagaaagaggtggaagcaagagaattgaaacatggt
acggaagagatcaccagagatatcccgaatatccgtgaagatgaattgcttcaccttgac
gaaagcggtattgttcagcttggtacgtatgtgaaaccgggtatgatccttgtcggtaaa
gtttctccaaaaggagagatcaaacctacgcctgaagagagactcctcagggcgatcttc
ggcgagaaagcgggccatgttgtgaacaagtcactctactgtccggcatctatggaaggg
gttgttgttgacatcaaagtattcaccaaaaaaggatacgagaaagatgcaagagcgatc
caggcctatgaagaggaaaaagcgatccttgactctgaccaccatgatcagctattgatg
atcgacagggaagagatcctgagaatcgcacactacctttcagggcaggaacttgcaaaa
gatgtcacgatcggtgataacgagttcaaggcaggcagcaaaattgatgaagagactatc
aagggagtgaatagatttgcgcttagaggtgtagtccagtcttactctgacgaggttcag
aatgagtacgaatccttgaagaattacttcctaaaacagaagaagagactcaagaatgag
catgaagagaaattgagtatccttgagaaggacgatattcttccttcaggtgtgacaaaa
ttggtcaagatctacatcgcgacaaagagaaagctcaaagttggggacaagatggcggga
cgtcacgggaacaaaggtatcgtatccaatatcgttcctgagatcgatatgccatatatg
gaagacggaagacctgttgagatcatccttaacccgcttggggtaccttcgcgtatgaac
atcggacagatcctcgaggttcaccttgggcttgtaggtaagagactgggtgaacagatc
caggagatgttcgacaataaaacagaggatttcatcaaagagctcagagccaaaatgatc
gagatcgctgatgttgccaagctgatgaatgcaaaagaggttctttctcaaatgagtgac
gaagagcttcttgcctatggtagagactggagcaggggtgtgaagttcgcagcacctgta
tttgaaggtacaaatcaggctgagtttgacaaactgtttgaattggccaagatcgagagt
gacggtaaaatgacactgtatgatggaaaaacaggtgagaagatgatcgagcgtgtcaac
gtgggatacatgtatatgctcaaactgcaccaccttgtcgatgagaaagtacacgcacgt
tcaaccggaccatactcgcttgttacacaacagccggtcggtggtaaagcactgttcggt
ggacagagattcggagagatggaagtatgggcacttgaagcctacggtgcttcccatatc
ctcaaagagatgctgacgatcaagtcggatgatgttgaaggtagagctagagcttataaa
gcgctgaccaaaggtgaatctgtaccggcttccggtgtgcctgaaacgatgttcgtattg
accaaagagcttcaggcccttggacttgacgcagagctatatgagagtaaaaaagaagtg
gagagtgaagatgagtaa
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