Syntrophothermus lipocalidus: Slip_1704
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Entry
Slip_1704 CDS
T01253
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
slp
Syntrophothermus lipocalidus
Pathway
slp03030
DNA replication
slp03430
Mismatch repair
slp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Slip_1704
03430 Mismatch repair
Slip_1704
03440 Homologous recombination
Slip_1704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slp03032
]
Slip_1704
03400 DNA repair and recombination proteins [BR:
slp03400
]
Slip_1704
Enzymes [BR:
slp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Slip_1704
DNA replication proteins [BR:
slp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Slip_1704
DNA repair and recombination proteins [BR:
slp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Slip_1704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF6282
Motif
Other DBs
NCBI-ProteinID:
ADI02462
UniProt:
D7CP27
LinkDB
All DBs
Position
complement(1773995..1777390)
Genome browser
AA seq
1131 aa
AA seq
DB search
MQGFVHLHTHSEYSLLDGAVRVSSLVKRAKELGMPALAITDHGVLYGVIDFYKQARKAGI
KPIIGCEVYVAPRHRFDRTPKVDDALYHLTLLCENQDGYRNLVQMVSKAFLEGFYYKPRV
DKELLEQHGRGLIALSGCIAGEVPELLLAGNYEEARAVAGYFREVFGENNFFLEVQDHGL
SEQRVVNEAMCHLSRELDVPLVATNDVHYLNRDDAFIHDVLLCIQTGKVLTDESRMRFPC
PEFYFKSGEEMSSLFAHIPEAVTNTVTIAERCSVDFGFDSFCLPEFPLPEGATAESYLED
LAWKKLRERFAHPGTKVIDRLRLELDVINRMGFAGYFLIVQDLVHWAKNRGIRVGPGRGS
AAGSLVSYVLGITDINPLEYGLLFERFLNPERITMPDIDIDFCFEKRDQVINYVIEKYGS
DRVAQIITFGTMAARAAIRDVGRVLEYPYSEVDRIAKMVPAELGISLDRALEVSGDLAEA
YKNDFRVRRLVDTARALEGFPRHASVHAAGVVIGRESLSRVLPLQRTADGHVVTQFTKET
VEEIGLLKMDILGLRTLTVIDRCLDIIRKTRGYEIDIDHISLDDPDTYRLLSEGDTVGVF
QLESEGLRRLLQEVRPSSFEDLIAIIALYRPGPLGSGMVEDFVNRKHGRQPIEYLHPKLE
PILRETYGVILYQEQVMRIASELADFSMGEADVLRRAMGKKKPDELAAQRNKFVEGAYRN
GIDRETASSLFELMEHFAGYGFNKSHSAAYALVSYQTAYLKAHYPVEYMCAFLTSVIDNQ
DRVVYYLKECRRMGMDILPPDINESFENFTVAGGRIRFGLGAIKNVGINAVRSIIEARKE
GRFSSLLEFCLRVDLRQLNKRVMENLILAGAFDSLGLKRKEALSLLDECLALAVEVRAAM
DSAQPSLFVDDAAATVVQDPVPRSKGEFSVQEKLKKEKEVLGFYVSQNPLEEYREVIPYL
MSHEISELSKLDEGQVVRIVATVTAMKRSRSKKGEPWARLVLEDFTGKVEAVVFPAVYRQ
HYRQIKLDTALVIEGKVIHRDDSVEVAVNQVYPVSHELKELHIQVSNAAGTGNSKSELVR
ILGGYSGEIPVYLRLSANKVIRLDKNLWVQPSLALKQQLSSLYGRGNVWFR
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggatttgtgcatcttcacacccattccgaatacagtctcttggacggggcggta
cgtgtatcgtcactggttaaaagggccaaagagttgggtatgcctgcattggccataacg
gatcacggtgttctctacggggtaatcgatttctacaaacaagctagaaaagccggaatt
aaacctattattggttgcgaggtatacgttgctccgcggcacagattcgaccggacaccc
aaggtggatgatgctctgtaccatttgactcttctctgcgagaaccaggacggataccgt
aacctggtgcagatggtaagcaaggcttttctggaggggttctattacaaaccgcgggtg
gacaaggaattgttagagcagcacggccgagggctcatagcgctctctgggtgcatcgcc
ggcgaggtacctgaactgcttctggctggcaattatgaggaggccagggcggttgccggc
tattttcgagaggtttttggtgagaacaactttttcctagaggtccaagatcacggtttg
agcgaacagcgggtggttaatgaggctatgtgtcatttgagccgggaactggatgtgccc
ctagtggcgaccaatgacgttcactacctcaaccgggacgacgcttttatccacgatgtc
ctgctctgcatccagaccggaaaggttcttacggacgaatcgcggatgaggttcccttgt
ccggagttttattttaagtcaggggaagaaatgagcagcttgttcgctcatatacccgaa
gcggttaccaacactgtgaccattgcagaaaggtgttcagttgatttcggatttgatagt
ttttgtctgccggaattccctttaccggaaggagctaccgccgaatcgtacctcgaagac
cttgcctggaagaaattgcgggaaaggtttgctcatcccggtacgaaagttatagaccgt
ctgaggcttgagctggatgtcatcaaccgaatggggtttgcaggttatttcctcatcgta
caagacctggtgcactgggctaagaacaggggaataagggtggggcccggaaggggatcg
gctgcaggcagcctggtatcgtatgtgctgggcatcaccgacatcaatcccctggagtat
ggactgctgtttgaacgtttcttaaacccggagagaataaccatgccggatatcgacatc
gatttttgtttcgagaaacgggaccaggtcataaactacgttatcgaaaagtacggcagc
gatcgggtggctcagatcattacattcggtactatggcagcccgagcggccatacgtgat
gtagggagggttttggagtacccgtacagcgaggttgaccgcattgccaaaatggtaccg
gcagaactgggtataagtttggaccgggctcttgaggtctcgggcgacctggcagaagcc
tacaagaacgattttcgggtgcgaaggctagtggatactgcccgggctctcgaaggtttc
ccacggcacgcttcggttcacgccgctggtgtggttatcgggcgagaaagcctgagccgt
gtgctacccctgcagaggaccgcagacgggcatgtagtaacccagtttaccaaggagacg
gtggaagagataggacttctcaagatggacatcctgggattgagaaccctgaccgtgatc
gaccgctgcctcgatatcatcagaaagacccgtggctacgaaatcgacatcgatcatatt
tctctagatgatcctgatacctacagactcctatcggaaggcgataccgtgggggtcttc
caactggaaagcgagggtttgaggcggcttttgcaggaggttcggccctccagttttgag
gatctcatcgccattatagctctctaccgccctggacccttgggaagcggtatggtagag
gactttgttaaccgtaaacacgggcggcaaccgatagaatacctacaccctaaactggag
ccgattcttcgcgaaacctacggggtaattctttaccaggaacaggtcatgaggattgcc
agcgaactcgccgactttagcatgggggaagccgatgtgctccgcagggctatggggaaa
aagaaaccggacgaactggcagcccagaggaataagttcgtggaaggagcttaccgcaac
gggattgacagagaaacggcatcatccctgtttgaattgatggagcattttgccggctac
gggttcaacaaatcccactcggcggcgtacgcgcttgtctcttatcagaccgcttatctc
aaggcgcactacccggttgaatacatgtgcgcctttctcaccagcgtcatcgataaccag
gaccgggtggtctactatttgaaggaatgcaggcgcatggggatggatatcttacctccg
gacatcaacgagagttttgagaattttaccgtagccggaggtaggatcaggtttgggttg
ggtgcgataaaaaacgtaggtattaacgcggtcagatccataatcgaagcccgtaaagaa
ggaagattctcttctctcctcgagttctgcctgcgggtggacctgcggcagttgaataag
cgggtcatggaaaacttgattctggcgggtgcttttgactcgttaggactcaaacgaaag
gaggccttatctctactggacgagtgtttggccttggctgttgaggtgagggctgctatg
gacagtgcacagccttctctgtttgttgacgatgccgcggccacggtggttcaggatcct
gttccccgttcgaaaggggaattcagtgtacaggagaaactgaagaaagaaaaagaagta
ttaggcttctatgtttctcagaacccgttggaggaataccgcgaggtgattccatatctg
atgtcacatgagatcagtgaactttccaaactcgatgaaggccaagtggtccggatcgtg
gctacggtaactgctatgaagaggagccgaagcaaaaagggggagccttgggctcgtctg
gtactcgaggatttcacggggaaagtcgaagcagttgtttttcctgcggtttaccggcag
cattacaggcagataaaactggatacggctttggtcattgaagggaaggttatccaccgg
gatgattcggttgaggttgccgtcaaccaggtgtatcccgtttctcacgaactgaaggag
ctgcacatccaggtatcgaacgcggctggcaccgggaactcgaagtcagaattggtcagg
attctgggaggttactcgggagaaataccagtataccttcggctttcagccaataaagtt
attcgtttagacaagaacttatgggtacagcccagtttggctttgaaacagcagctatct
tcactctacggcagaggaaacgtgtggttcagatga
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