KEGG   Syntrophothermus lipocalidus: Slip_1704
Entry
Slip_1704         CDS       T01253                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
slp  Syntrophothermus lipocalidus
Pathway
slp03030  DNA replication
slp03430  Mismatch repair
slp03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:slp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Slip_1704
   03430 Mismatch repair
    Slip_1704
   03440 Homologous recombination
    Slip_1704
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:slp03032]
    Slip_1704
   03400 DNA repair and recombination proteins [BR:slp03400]
    Slip_1704
Enzymes [BR:slp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Slip_1704
DNA replication proteins [BR:slp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Slip_1704
DNA repair and recombination proteins [BR:slp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Slip_1704
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon HROB DUF6282
Other DBs
NCBI-ProteinID: ADI02462
UniProt: D7CP27
LinkDB
Position
complement(1773995..1777390)
AA seq 1131 aa
MQGFVHLHTHSEYSLLDGAVRVSSLVKRAKELGMPALAITDHGVLYGVIDFYKQARKAGI
KPIIGCEVYVAPRHRFDRTPKVDDALYHLTLLCENQDGYRNLVQMVSKAFLEGFYYKPRV
DKELLEQHGRGLIALSGCIAGEVPELLLAGNYEEARAVAGYFREVFGENNFFLEVQDHGL
SEQRVVNEAMCHLSRELDVPLVATNDVHYLNRDDAFIHDVLLCIQTGKVLTDESRMRFPC
PEFYFKSGEEMSSLFAHIPEAVTNTVTIAERCSVDFGFDSFCLPEFPLPEGATAESYLED
LAWKKLRERFAHPGTKVIDRLRLELDVINRMGFAGYFLIVQDLVHWAKNRGIRVGPGRGS
AAGSLVSYVLGITDINPLEYGLLFERFLNPERITMPDIDIDFCFEKRDQVINYVIEKYGS
DRVAQIITFGTMAARAAIRDVGRVLEYPYSEVDRIAKMVPAELGISLDRALEVSGDLAEA
YKNDFRVRRLVDTARALEGFPRHASVHAAGVVIGRESLSRVLPLQRTADGHVVTQFTKET
VEEIGLLKMDILGLRTLTVIDRCLDIIRKTRGYEIDIDHISLDDPDTYRLLSEGDTVGVF
QLESEGLRRLLQEVRPSSFEDLIAIIALYRPGPLGSGMVEDFVNRKHGRQPIEYLHPKLE
PILRETYGVILYQEQVMRIASELADFSMGEADVLRRAMGKKKPDELAAQRNKFVEGAYRN
GIDRETASSLFELMEHFAGYGFNKSHSAAYALVSYQTAYLKAHYPVEYMCAFLTSVIDNQ
DRVVYYLKECRRMGMDILPPDINESFENFTVAGGRIRFGLGAIKNVGINAVRSIIEARKE
GRFSSLLEFCLRVDLRQLNKRVMENLILAGAFDSLGLKRKEALSLLDECLALAVEVRAAM
DSAQPSLFVDDAAATVVQDPVPRSKGEFSVQEKLKKEKEVLGFYVSQNPLEEYREVIPYL
MSHEISELSKLDEGQVVRIVATVTAMKRSRSKKGEPWARLVLEDFTGKVEAVVFPAVYRQ
HYRQIKLDTALVIEGKVIHRDDSVEVAVNQVYPVSHELKELHIQVSNAAGTGNSKSELVR
ILGGYSGEIPVYLRLSANKVIRLDKNLWVQPSLALKQQLSSLYGRGNVWFR
NT seq 3396 nt   +upstreamnt  +downstreamnt
atgcaaggatttgtgcatcttcacacccattccgaatacagtctcttggacggggcggta
cgtgtatcgtcactggttaaaagggccaaagagttgggtatgcctgcattggccataacg
gatcacggtgttctctacggggtaatcgatttctacaaacaagctagaaaagccggaatt
aaacctattattggttgcgaggtatacgttgctccgcggcacagattcgaccggacaccc
aaggtggatgatgctctgtaccatttgactcttctctgcgagaaccaggacggataccgt
aacctggtgcagatggtaagcaaggcttttctggaggggttctattacaaaccgcgggtg
gacaaggaattgttagagcagcacggccgagggctcatagcgctctctgggtgcatcgcc
ggcgaggtacctgaactgcttctggctggcaattatgaggaggccagggcggttgccggc
tattttcgagaggtttttggtgagaacaactttttcctagaggtccaagatcacggtttg
agcgaacagcgggtggttaatgaggctatgtgtcatttgagccgggaactggatgtgccc
ctagtggcgaccaatgacgttcactacctcaaccgggacgacgcttttatccacgatgtc
ctgctctgcatccagaccggaaaggttcttacggacgaatcgcggatgaggttcccttgt
ccggagttttattttaagtcaggggaagaaatgagcagcttgttcgctcatatacccgaa
gcggttaccaacactgtgaccattgcagaaaggtgttcagttgatttcggatttgatagt
ttttgtctgccggaattccctttaccggaaggagctaccgccgaatcgtacctcgaagac
cttgcctggaagaaattgcgggaaaggtttgctcatcccggtacgaaagttatagaccgt
ctgaggcttgagctggatgtcatcaaccgaatggggtttgcaggttatttcctcatcgta
caagacctggtgcactgggctaagaacaggggaataagggtggggcccggaaggggatcg
gctgcaggcagcctggtatcgtatgtgctgggcatcaccgacatcaatcccctggagtat
ggactgctgtttgaacgtttcttaaacccggagagaataaccatgccggatatcgacatc
gatttttgtttcgagaaacgggaccaggtcataaactacgttatcgaaaagtacggcagc
gatcgggtggctcagatcattacattcggtactatggcagcccgagcggccatacgtgat
gtagggagggttttggagtacccgtacagcgaggttgaccgcattgccaaaatggtaccg
gcagaactgggtataagtttggaccgggctcttgaggtctcgggcgacctggcagaagcc
tacaagaacgattttcgggtgcgaaggctagtggatactgcccgggctctcgaaggtttc
ccacggcacgcttcggttcacgccgctggtgtggttatcgggcgagaaagcctgagccgt
gtgctacccctgcagaggaccgcagacgggcatgtagtaacccagtttaccaaggagacg
gtggaagagataggacttctcaagatggacatcctgggattgagaaccctgaccgtgatc
gaccgctgcctcgatatcatcagaaagacccgtggctacgaaatcgacatcgatcatatt
tctctagatgatcctgatacctacagactcctatcggaaggcgataccgtgggggtcttc
caactggaaagcgagggtttgaggcggcttttgcaggaggttcggccctccagttttgag
gatctcatcgccattatagctctctaccgccctggacccttgggaagcggtatggtagag
gactttgttaaccgtaaacacgggcggcaaccgatagaatacctacaccctaaactggag
ccgattcttcgcgaaacctacggggtaattctttaccaggaacaggtcatgaggattgcc
agcgaactcgccgactttagcatgggggaagccgatgtgctccgcagggctatggggaaa
aagaaaccggacgaactggcagcccagaggaataagttcgtggaaggagcttaccgcaac
gggattgacagagaaacggcatcatccctgtttgaattgatggagcattttgccggctac
gggttcaacaaatcccactcggcggcgtacgcgcttgtctcttatcagaccgcttatctc
aaggcgcactacccggttgaatacatgtgcgcctttctcaccagcgtcatcgataaccag
gaccgggtggtctactatttgaaggaatgcaggcgcatggggatggatatcttacctccg
gacatcaacgagagttttgagaattttaccgtagccggaggtaggatcaggtttgggttg
ggtgcgataaaaaacgtaggtattaacgcggtcagatccataatcgaagcccgtaaagaa
ggaagattctcttctctcctcgagttctgcctgcgggtggacctgcggcagttgaataag
cgggtcatggaaaacttgattctggcgggtgcttttgactcgttaggactcaaacgaaag
gaggccttatctctactggacgagtgtttggccttggctgttgaggtgagggctgctatg
gacagtgcacagccttctctgtttgttgacgatgccgcggccacggtggttcaggatcct
gttccccgttcgaaaggggaattcagtgtacaggagaaactgaagaaagaaaaagaagta
ttaggcttctatgtttctcagaacccgttggaggaataccgcgaggtgattccatatctg
atgtcacatgagatcagtgaactttccaaactcgatgaaggccaagtggtccggatcgtg
gctacggtaactgctatgaagaggagccgaagcaaaaagggggagccttgggctcgtctg
gtactcgaggatttcacggggaaagtcgaagcagttgtttttcctgcggtttaccggcag
cattacaggcagataaaactggatacggctttggtcattgaagggaaggttatccaccgg
gatgattcggttgaggttgccgtcaaccaggtgtatcccgtttctcacgaactgaaggag
ctgcacatccaggtatcgaacgcggctggcaccgggaactcgaagtcagaattggtcagg
attctgggaggttactcgggagaaataccagtataccttcggctttcagccaataaagtt
attcgtttagacaagaacttatgggtacagcccagtttggctttgaaacagcagctatct
tcactctacggcagaggaaacgtgtggttcagatga

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