Sideroxydans lithotrophicus: Slit_2024
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Entry
Slit_2024 CDS
T01196
Name
(GenBank) diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
Organism
slt
Sideroxydans lithotrophicus
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS
PAS_9
PAS_4
PAS_3
dCache_1
PAS_8
DUF3098
DUF1759
Motif
Other DBs
NCBI-ProteinID:
ADE12252
UniProt:
D5CTU0
LinkDB
All DBs
Position
2039302..2042337
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AA seq
1011 aa
AA seq
DB search
MIAPIRVRKIAMLVTLLSLVATGFYWWQLSKAGDQLRSETLAQAELRARQLNDSVAQQVA
ILIRYVDFAAQELGETYIDGKLSEFRKQVDEVEERFPEQSLLQIAVIDAQGYLAYSNLGM
KERVYLGDREHFKAHLGSDKTQLFVSAPVLGRVSRQWSIQFTRPLLRHGRFAGVIVLSLS
PEYLHKTLRELSLGREDSIAIFRQSGEYLARNVDNEIALGKAVGPRPFLGPDAPSGGLFK
SKAYFDNVVRLFQWRRLSDAPVVVVLGLSETALLKPVDAIIHKNRWQAGIATALLWLLTL
GAILLLQRLSSQQKLIVRHAQRLQATSNDLQESEKRLRTIFETEPECIKVVDRNGELVEM
NQAGLAMLEAATLEEARQKKLIDYVAPEDQAAFLALHRRVMNGESAVLEFKITGLKGTLH
HLETHATPMPDANGNISLLLGITRDVTASMHAKQQLRIAATAFESQEGMLVTDAVGAILR
VNQAFTRITGYTADEVIGKNPRILNSGRHDAYFYKEMWERIKRTGEWEGEIWNRRKNGDV
YPEHLTITAVKDAGGNVVNYVATLMDITASKASEEEIRNLAFFDPLTRLPNRRLLQDRLQ
QALASCGRSGKSGAILFIDLDNFKNLNDTLGHDIGDLLLEKVAIRLSSCVREGDTVARIG
GDEFVVMLEDLSDNILDAAEQTESVGSKILASLNVPYQLGIHTYDNSPSIGATLFNDNHN
SIDELLKQADIAMYQAKKAGRNTMRFFDPRMQQSLSARLALELELRKAIEKDQFQLYYQI
QVDETHRPLGAEALLRWMHPEHGLMAPAEFIPMAEETGLIVPIGWWVLETACTQLKAWEK
DPLTRNLVLSINVSAKQFHQPDFVDQVQAAVDHYGIDPALLKLELTESILLENVDTTIKR
MSALKKTGVGFSLDDFGTGYSSLQYLKRLPLDQLKIDQSFMQEITSDSSDMAIVSTIIAM
AQSMQMGVIAEGVETEEQRQLLLRKGCNHFQGYLFSKPVPVEQFEKLLHRG
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgatcgccccgatacgtgtcagaaagatcgcaatgctggttaccctgttgtcgctggtg
gccacaggattctattggtggcaattatccaaggcaggcgaccagctccgatccgaaaca
ctcgcccaggcagaattgcgtgcccggcaactgaacgactcagtcgcccagcaggtcgcg
atactgatccgctatgtcgatttcgccgcgcaagaactcggcgaaacctatatcgatggc
aaattgagcgagttccgcaagcaggtggacgaagttgaagaacgttttccggaacaatcg
ctgctgcagatcgccgtgatcgatgcccaaggttatctcgcctactccaacctcggcatg
aaggaacgggtatacctgggtgaccgcgaacacttcaaggcacatttggggagcgataag
acgcagctgtttgtcagcgctcccgtgttgggcagggtctccaggcaatggtccatccag
ttcaccaggccgctcctgcgccacggccggtttgcaggtgtcatcgtcctctcgctgtcg
cctgagtatctgcacaagacattgcgcgagttgtcgttggggcgagaagactcgatagcg
atcttccggcaaagcggggaataccttgcgcgtaacgtggacaacgagatcgcgcttggc
aaagcggtagggccacgtccgtttctcggtcccgatgcgccatctggcgggctgttcaag
tccaaggcctatttcgacaacgtggtccgcttgttccaatggcgccgcctcagcgatgcc
ccggtcgtcgttgtgctggggctgagcgaaacagccttgctgaagccggtcgatgcgatc
attcacaagaaccgctggcaagccggtatcgcaacggccctgctctggctgttgacgctc
ggagccatcctgctgttgcaacgcctgagttcgcagcagaaattgatcgtgcggcacgca
cagcgattgcaggcaacgagtaacgacctgcaagagagcgagaagcgcttgcgcaccatc
ttcgaaaccgagccggaatgcatcaaggtcgtggatcgcaatggggaactggtggaaatg
aatcaggcaggcctggcgatgctggaagcagctaccctggaggaagcacgacagaaaaaa
ctgatcgactatgtcgccccggaggatcaggctgcttttttagcattgcatcgccgcgtg
atgaatggagaaagcgctgttctggagttcaagatcaccgggctcaagggcactttgcat
cacctggaaacccatgccactccgatgcccgatgcgaatggcaatatctcgctactgctc
ggcatcacccgcgatgtcacagccagcatgcacgccaaacagcagttgcgcatcgcggcc
actgcgttcgagtcgcaggaaggcatgctggtcaccgatgccgtcggggccattctgcgc
gtgaaccaggccttcacgcggatcactggttacaccgctgatgaagtcatcggcaagaat
ccgcgcatcctcaactcgggccggcacgatgcctatttctacaaggagatgtgggaaagg
atcaaacgtaccggcgagtgggagggcgaaatatggaatcggcgcaagaacggagatgtc
taccctgagcaccttaccatcaccgcggtcaaggacgccggggggaacgtggtgaattat
gtcgcgaccctgatggatatcaccgcaagcaaggcatccgaagaagagatcaggaatctg
gctttcttcgatccgctcacccggctgcccaaccggcggttgctgcaggatcgcctgcaa
caggcactggcttcctgcggccggtccggcaagagtggtgcgatacttttcatcgacctg
gataatttcaagaatctcaatgacacgctcggccatgacatcggcgatctgctgctggaa
aaggtcgccatacggctgagcagttgtgtgcgcgaaggcgacaccgttgcccgcatcgga
ggcgacgagttcgtcgtgatgctggaagacctgagcgacaacatccttgatgcagcggaa
cagaccgaatctgtcggcagcaagatcctcgcctccctcaacgtgccttaccagcttggc
atacacacctacgacaacagcccgagcatcggtgcgaccctgttcaacgacaaccataat
tcgatcgacgaactgctgaaacaggccgacatcgccatgtatcaggcaaagaaggccggg
cgcaacaccatgcgcttcttcgatccgcgcatgcagcaatcgctcagcgcccgcctggca
ctcgaactggaattgcgcaaggcgatcgaaaaagaccagttccagctttattaccagatc
caggtcgatgaaacgcaccgcccgctgggagccgaggcactgttgcgctggatgcacccc
gagcatggcctgatggcgcccgcagaattcataccgatggcggaagaaacaggcttgatc
gtccccatcggctggtgggtgctcgaaaccgcttgcacccagctcaaggcatgggagaag
gatccactcacccgcaacctggtcctatccatcaacgtgagtgccaagcaattccaccag
cccgatttcgtggatcaggtacaggctgccgtggatcactatggcatcgaccctgccctg
ctgaagctggagctcactgaaagcatcctgctggagaatgtcgacaccacgatcaagcgg
atgtccgcattgaaaaagaccggggtcggcttttcgctggacgacttcggtaccggttat
tcttccctgcaatacctcaaacgtctgccgctcgatcagctcaagatagatcagtcgttc
atgcaggagatcacttccgacagcagcgacatggctatcgtgagcaccatcatcgccatg
gctcaaagcatgcagatgggtgtcatcgccgaaggtgtagagacggaagaacaacggcag
ctcctcctgcgaaagggctgcaatcactttcagggatatctgttcagcaaacccgttcct
gtagaacaattcgagaaactgctgcatcgtggctga
DBGET
integrated database retrieval system
