KEGG   Solanum lycopersicum (tomato): 101253638
Entry
101253638         CDS       T02665                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:3.6.4.13]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101253638
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sly03041]
    101253638
Enzymes [BR:sly01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     101253638
Spliceosome [BR:sly03041]
 Complex C
  Other components
   Step II factors
    101253638
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD HA2_N AAA_22 SLFN-g3_helicase AAA_19 AAA_30 nSTAND3 Flavi_DEAD AAA_24 AAA_16 T2SSE ResIII Sigma54_activ_2 AAA_14 TMEM247 AAA_7 ABC_tran ATPase
Other DBs
NCBI-GeneID: 101253638
NCBI-ProteinID: XP_004249090
UniProt: A0A3Q7JEB3
LinkDB
Position
10:complement(59973590..59985161)
AA seq 1285 aa
MQKGDAGPIDLDKTTTTLEPDKTSSGGLFVPGKERVVFKPSERKSLLGLDALAIAKRGGA
TVESEFKVPRERLASIASSLDEDEESSAVSGIDELGHTASNVSRNNVRRRYRESYASETS
ASGSAVTDERGDAETVVRSHLNENTEVPPVSSGSLRSTISRGESVDRERDGSEYRDNYRS
ESREGRRRDRRTSREERHHRDSSRGYEREYDGDDGRKRSRYDGFRRTPGRSEWDDGRWEW
QDTPRRDSRSSSSSRRYEPSPSPKFLGASPDSRLVSPWLGDHTPQSAGAASPWDSVAPSP
TPIRASGSSVRSSSSRYGAKSSLIMSSTGGALSEDGGDDTNGASEDQNEEITESMRLEME
YNSDRAWYDREEGSTVFEGDGSSAFLGDEASFQKKEVELAKKLVRRDGSKMSLAQSKRLS
QLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRIVFTKQAE
PIMPIKDPTSDMAIISRKGSALVREIREKQNMHKSRQRFWELAGSKLGDILGVEKSAEQV
DADTATVGEDGEVDFKGEARFSQHLKKGEAVSDFALSKTLSQQRQYLPIFSVRDDLLQVV
RENQVVVVVGETGSGKTTQLTQYLHEDGYTSNGIVGCTQPRRVAAMSVAKRVSEEMETEL
GDKVGYAIRFEDVTGPTTVIKYMTDGVLLRETLKDPDLEKYRVIVMDEAHERSLNTDVLF
GILKKVVARRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNKLYSKTPCEDYVE
AAVKQAMTIHITSAPGDILIFMTGQDEIEATCYALSERMEQLTSSTKQAVPNLLILPIYS
QLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVYNPRMGMDAL
QVFPISRAAADQRAGRAGRTGPGTCYRLYTENAYENEMLQSPVPEIQRTNLGNVVLLLKS
LKIQNLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGDLTSLGWKMVEFPLDPPLAKMLL
MGEQLECLNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKA
NQYRGDWCNDHYLQVKGLRKAREVRSQLLDILKTLKIPLTSCGPDWDVVRKAICSAYFHN
AARLKGVGEYVNCRNGMPCHLHPTSALYGLGYTPDNVVYHELILTSKEYMQCVTAVEPHW
LAELGPMFFSVKDSDTSMLEHKKKQKEEKTAMEEEMEKLRKVQAEADRRNKEKEKEKRAK
ELQQVSMPGLKKGSTTYLRPKRLGL
NT seq 3858 nt   +upstreamnt  +downstreamnt
atgcagaaaggagatgctggaccaattgatctggacaagacaacaacgacattggaacct
gataagacgagcagtgggggtctttttgttcctgggaaggagagagtagtttttaaacct
tctgagcggaaatcacttctagggcttgatgcattggcgattgctaaaaggggaggggct
actgtagagagtgaatttaaagttccaagggagagacttgcttcaattgcgtcatcttta
gatgaggatgaagagtcatctgctgtttctggaattgatgagttgggacatactgcatct
aatgtttcacggaataatgtacggaggaggtatcgtgaatcttatgctagtgagacatct
gcttcaggtagtgcagtaaccgatgaacggggagatgctgagacagtcgtgaggtctcac
ttgaatgagaacacagaggttccacctgtatcttctgggagtttacgttctacgatatct
aggggcgagtcagttgaccgtgaaagagatggaagtgaatacagggataattacagaagt
gaaagcagggaagggagaaggagagatagaagaaccagcagggaagagcgccaccatagg
gattcatcacgtggttatgaaagagaatatgatggggatgacggaagaaaaagaagtaga
tatgatggtttcaggaggactcctggaagatcggaatgggatgatggtagatgggagtgg
caagatacccctcgtcgtgatagtcgttccagtagtagtagcaggcgttatgagccttca
ccatcaccaaagtttcttggagcttcacctgattctcgacttgtttcaccatggctcggg
gatcatactcctcaatctgctggagctgcttctccgtgggacagtgtggctccttctcca
actccaattagggcatctgggtcatcagtaagatcttcaagttccagatatggtgctaaa
tccagtttgattatgtcttctacaggaggtgctctgtctgaggacggaggagatgataca
aatggtgcctctgaagatcagaatgaagagattactgaaagtatgcgtttagagatggag
tataattcagatcgtgcctggtatgaccgcgaagaaggtagtacagtgtttgaaggggat
ggttcatcagcatttctaggtgatgaggcatctttccagaagaaagaggtggaattggcc
aaaaaactggttcgtagagatggaagcaagatgtcacttgctcaaagtaaaaggttatca
cagctcactgcagacaatgctcaatgggaggaccgccagcttttgagatctggagctgtt
agaggtaccgaggtgcagacggagtttgatgatgaggatgaacggaaggttattcttctt
gttcacgatacaaagcctccctttttggatggaagaattgttttcaccaagcaagctgag
ccgataatgccaataaaggacccaacttcagatatggccataatttcacgtaaaggctca
gctctagttcgggaaatacgtgaaaaacaaaacatgcacaagtctcgacaaagattttgg
gagctggctggttcaaaactcggagatatccttggtgttgagaagagtgcagagcaggtt
gatgcggatactgctacagtgggcgaggatggagaggttgattttaaaggagaagctaga
ttctcacagcacttaaagaaaggggaagctgtcagtgattttgcattatcaaaaacactt
tcacagcaaaggcagtatctgcccatcttctctgtgcgagatgatttattgcaggtggtt
cgcgaaaaccaggtggtggtggttgttggagaaactggttctggaaagacaacacagcta
actcagtaccttcatgaagatggctatacaagtaacgggattgttggttgcacccaaccc
aggcgtgtggcagccatgagtgttgcaaaaagagtcagtgaagaaatggaaaccgagctt
ggtgataaagttggatatgccattcgttttgaagatgtcactgggccaacaactgttatc
aagtacatgactgatggtgttcttctaagggaaacactcaaagatcctgatcttgaaaaa
tatcgtgtaattgtaatggatgaggcccatgagagatcactcaacactgatgtccttttt
ggcattcttaagaaagttgtggctaggcgacgtgattttaagcttattgtcacttctgca
actctgaatgcccagaagttctctaacttttttgggagcgtaccaatatttcacatacct
ggaagaacctttccagtaaataaattgtatagtaaaaccccatgtgaagattatgtcgaa
gctgcagttaagcaagccatgaccatccatattactagtgcaccgggtgatatactcatc
ttcatgactggtcaggatgagattgaagctacctgttatgcactttcagagcgcatggaa
cagcttacctcgtcaacaaagcaagcagtgcccaatctattgattcttcctatatactct
caactgcccgctgatttgcaagcaaaaatattccagaaagctgaagacggggctcgaaaa
tgcatagttgctactaatattgcagaaacatccttgactgtcgatggaatttactacgtc
attgatacaggctatggtaaaatgaaggtgtacaatcctcgtatgggtatggatgctctg
caagtgttccctattagtcgagctgcagctgaccagcgtgctggtcgagctggtagaact
ggcccaggaacttgttaccggctttatactgagaatgcgtatgagaatgaaatgctgcaa
agtcccgtgccagagattcaacggacaaatcttgggaatgtggttttgctgctcaagtct
ctcaaaattcagaacctgttggattttgattttatggacccacctcctcaggataacatc
cttaactccatgtatcagttgtgggtattaggtgcacttaacaatgttggggatttaaca
agccttggctggaaaatggtggagttcccattggatcctccccttgccaaaatgctcttg
atgggagaacaactagaatgtttaaatgaggttctgactattgtttctatgctttcagtg
ccttctgttttctttagacccaaggatagggctgaggaaagtgatgctgctagggaaaag
ttttttgtgccagaatctgatcaccttacactgcttaatgtttaccagcaatggaaagct
aatcaatacagaggggactggtgtaatgaccactatttacaggtcaaaggtttacgcaag
gctagggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcact
tcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataat
gcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccac
cttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcat
gagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactgg
ttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaa
cataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgt
aaagtacaggctgaagctgacagacgaaacaaggagaaggagaaggaaaagagagcaaaa
gaactgcaacaggtttctatgcctgggttgaagaaaggctcaactacttatttacgaccc
aagaggctcggtctgtaa

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