Solanum lycopersicum (tomato): 101258879
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Entry
101258879 CDS
T02665
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
Organism
sly
Solanum lycopersicum (tomato)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
101258879
NCBI-ProteinID:
XP_004244550
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Position
8:1670174..1682519
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AA seq
1264 aa
AA seq
DB search
MDSQPNNLYDTASQPDTGNDAYTFLEFNTQGEEFDYPEFQELSQPIRSSAWPTPSDSLVS
EVPDRPPSSEASPSTKSRGGGGNSNVSSSSNQASVVDALAAGMSGLNFEETGDDEGFEYG
KGDFGVEHACKYCGVTNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLH
KDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCP
LIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDEPQP
VALKYEDAYQYQNIFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKRVAYFVFPKED
NELRLVPGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRASQGVPIDVNHGFSVD
FVWKSTSFDRMQSAMKTFAVDETSVSGYIYHHLLGHEVEMQMVRNTLPRRFGAPGLPELN
ASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAE
KISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS
DEKKYKALKRATEREIAQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPL
VLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVFLGVKPIRLQVQYRMHPALSE
FPSNSFYEGTLQNGVTVNERLSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA
ANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQ
GREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLT
HYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFFGGGPGAVQGDSFGSASGPSADRR
NSRPRGSYMAPGVPNGTQKPGVHPAGYPMPRVPFPPYHGGPPQPYAIPTRGAVHGPVGAV
PHVPQPGSRGFGAGRGNANAPIGSHLPHHQGSQQPVGSIGSNFNFPALDNPNSQPSIGGP
LSQPGYASNMAIQGPGQSFRDGLSMGSMSQDFVGDDFKSQGSHVPYNVADFSTQASQGAY
AVDYSTQGAQAGFPGNFLNQNSQSGYSRFGSGNEFMSQDYMAHGSQGLFTQAGYNDPLQD
DGSQNHFGMSNVNSLQSQSLLNPIYSQPFAHYNTQPLNLQSSQPQQQQGPQGQCFQNQKL
QYNS
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atggattctcagccgaacaatctctacgacacggcgtctcagccggataccggcaacgac
gcatacacgtttctggaattcaacacacaaggggaagagtttgattatcctgaatttcaa
gagctttcacagccaattcgatcttctgcgtggccaacaccgtctgattctctggtatct
gaagtacctgatcggcctccatcgtcggaagcgtcgccgtcgacgaaatcacggggtgga
ggtgggaatagtaatgttagtagtagtagtaatcaggcgtcggttgtggatgcattggca
gcggggatgagtgggttgaattttgaagagacaggggatgatgagggttttgagtatgga
aaaggggattttggggttgagcatgcttgtaagtactgtggagtgacgaatcctgcttgt
gtagttaggtgcaatgtgccatcttgccgtaagtggttctgtaattccagaggaaacact
tcgggctcacatattgttaatcacctggtgcgagcaaaacacaaggaggtgtgtcttcat
aaagatagtccacttggagaaacaattctagagtgctacaattgtggatgccgaaatgtc
tttcttcttgggttcatttctgccaagacagagagtgtcgtcgttcttctctgtagagaa
ccttgtctaagtgttaatgcattaaaggatatgaactgggacctcagtcagtggtgccca
ctcattgatgacaggtgctttttacagtggcttgttaaggtcccttccgagcaagaacag
ttgagagcgcgccagatcagtgctcaacaaatcaacaaagtagaagaattgtggaagaca
aatcctgatgctaccctggaagatcttgagaagcctggtgtggatgatgagcctcagcct
gttgccttgaagtatgaagatgcctatcagtatcaaaacatatttgcaccattgatcaag
cttgaagctgactatgataagatgatgaaagagtctcaaagtaaagacaatcttactatt
cgatgggatattggtctcaacaagaagcgcgttgcatattttgtgttcccgaaggaagat
aatgagttgcgtcttgtacctggtgatgagctaaggctacgatattcaggggatgcagct
catccagcctggcaatctgtggggcacgtggtaaaattaacagctcaagaagaggttgcg
cttgaactacgtgccagccagggggttccaatcgatgtcaaccacgggtttagtgttgac
ttcgtttggaaaagtacgagttttgatcggatgcaaagtgcaatgaagacctttgcagtg
gatgagactagtgtcagtgggtatatttaccatcatctgttaggtcatgaagttgagatg
cagatggtccggaatacacttccacgtcgttttggagctcctggtcttccggagcttaat
gcatctcaggtttttgctgtaaaaagcgttcttcaaaagcccatcagtttaattcaaggc
ccacctggaactggaaaaactgtcacctctgccgccattgtgtatcatatggcgaaacaa
ggccaaggacaggttttggtctgtgcccccagtaacgtggctgtggaccaattagctgag
aagataagtgctaccggtctaaaggtggtcaggctctgtgccaagtcgagggaagctgtc
agttctcctgtcgagcatttaacccttcactatcaggttcgccatcttgacacgtctgag
aagagtgaacttcataagttacagcaactgaaagatgaacaaggagagctctccagtagt
gatgagaagaaatataaagctctgaaaagggcaacagagagggaaatagctcagagtgct
gatgtcatttgttgcacatgcgttggtgctggagatcctagattggctaatttcagattc
cgccaggtgctcattgatgaatccactcaggctactgagcctgaatgtctcattcctttg
gttcttggtgcaaagcaggctgttcttgtcggtgaccattgccagcttggacctgttatt
atgtgcaagaaagcggctcgtgctgggctggctcaatctctctttgaacgccttgtgttt
ctaggcgtgaaacctattaggttacaggtacaataccgtatgcaccctgcattgtctgag
ttcccatcaaatagcttttatgaaggtacacttcaaaatggtgtaaccgtcaatgaaaga
ctatcatcaggaattgattttccttggcctgtgccgaaccgtcccatgttcttctatgtt
cagatgggacaagaggagattagtgctagtggaacttcctatctgaatagaactgaagct
gcaaatgtggagaagattgtgactacatttctgaagagtggggtagtccctagtcagatt
ggggtcataacaccatatgagggtcaacgggcatatatagtgaattatatggcaagaaat
ggttccctaagacaacaactctacaaggaaatcgaggttgcaagtgtagattcatttcaa
gggagggagaaggattatattattttgtcatgtgtcaggagtaatgaacatcagggcatt
gggttccttaatgatccacgcaggcttaatgttgctcttacccgtgctcgttatggtatt
gttatcctgggaaatcctaaagtcttgagcaaacagcctctgtggaatggtttgttaaca
cactacaaggagcacgagtgcttggttgaaggtcctctcaataacttaaagcagagcatg
gttcaatttcagaagcccaaaaagatctacaatgagcgcagactcttctttggtggtgga
cctggagcagttcaaggtgacagtttcggatctgcttcaggccccagtgctgacaggaga
aatagtcgtcctaggggttcttatatggcacctggtgtacccaatggtactcagaaacct
ggtgttcatcctgctggttatccgatgcctcgggttccctttcccccttaccatggaggc
cctccacaaccatatgcaattcctactcgtggtgctgtccatggacctgttggagctgtt
cctcatgttccacaaccaggcagccggggttttggggctggacgtggcaacgccaatgcc
ccaattggtagtcatctccctcaccatcaagggtcccagcagccggtcggaagtattgga
tctaacttcaactttcctgcattagataatccaaacagtcagccttccatcggaggacct
ttatctcaacctggatatgcttctaatatggctatccagggaccaggccagtcattccgc
gatggactttctatgggtagcatgtcacaggattttgtgggagatgatttcaagagccag
gggtctcatgttccatataatgttgctgacttctctacacaggcttctcaaggtgcatat
gctgttgattattcaactcaaggagcacaggctgggtttccagggaattttttaaaccag
aactctcaatctggatactcccgttttggttcaggaaatgaattcatgtctcaggattat
atggctcatggttcgcaaggtctatttacgcaagctggatataatgatccattacaagat
gatggttcacagaatcattttggcatgtccaatgttaattctcttcagtctcagagttta
ctcaatccaatttattcccagccatttgcgcactacaatacacagccattgaacttgcaa
agttctcagcctcaacagcagcaagggccacaaggccagtgcttccaaaatcagaaactc
cagtacaatagttga
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