KEGG   Solanum lycopersicum (tomato): 101258879
Entry
101258879         CDS       T02665                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
Organism
sly  Solanum lycopersicum (tomato)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD UvrD-helicase Helicase_RecD nSTAND3 ATPase PhoH AAA_16 SRP54 AAA_22 Ribosomal_S13_N AAA_25 AAA AAA_32
Other DBs
NCBI-GeneID: 101258879
NCBI-ProteinID: XP_004244550
LinkDB
Position
8:1670174..1682519
AA seq 1264 aa
MDSQPNNLYDTASQPDTGNDAYTFLEFNTQGEEFDYPEFQELSQPIRSSAWPTPSDSLVS
EVPDRPPSSEASPSTKSRGGGGNSNVSSSSNQASVVDALAAGMSGLNFEETGDDEGFEYG
KGDFGVEHACKYCGVTNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLH
KDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCP
LIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDEPQP
VALKYEDAYQYQNIFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKRVAYFVFPKED
NELRLVPGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRASQGVPIDVNHGFSVD
FVWKSTSFDRMQSAMKTFAVDETSVSGYIYHHLLGHEVEMQMVRNTLPRRFGAPGLPELN
ASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAE
KISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS
DEKKYKALKRATEREIAQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPL
VLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVFLGVKPIRLQVQYRMHPALSE
FPSNSFYEGTLQNGVTVNERLSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA
ANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQ
GREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLT
HYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFFGGGPGAVQGDSFGSASGPSADRR
NSRPRGSYMAPGVPNGTQKPGVHPAGYPMPRVPFPPYHGGPPQPYAIPTRGAVHGPVGAV
PHVPQPGSRGFGAGRGNANAPIGSHLPHHQGSQQPVGSIGSNFNFPALDNPNSQPSIGGP
LSQPGYASNMAIQGPGQSFRDGLSMGSMSQDFVGDDFKSQGSHVPYNVADFSTQASQGAY
AVDYSTQGAQAGFPGNFLNQNSQSGYSRFGSGNEFMSQDYMAHGSQGLFTQAGYNDPLQD
DGSQNHFGMSNVNSLQSQSLLNPIYSQPFAHYNTQPLNLQSSQPQQQQGPQGQCFQNQKL
QYNS
NT seq 3795 nt   +upstreamnt  +downstreamnt
atggattctcagccgaacaatctctacgacacggcgtctcagccggataccggcaacgac
gcatacacgtttctggaattcaacacacaaggggaagagtttgattatcctgaatttcaa
gagctttcacagccaattcgatcttctgcgtggccaacaccgtctgattctctggtatct
gaagtacctgatcggcctccatcgtcggaagcgtcgccgtcgacgaaatcacggggtgga
ggtgggaatagtaatgttagtagtagtagtaatcaggcgtcggttgtggatgcattggca
gcggggatgagtgggttgaattttgaagagacaggggatgatgagggttttgagtatgga
aaaggggattttggggttgagcatgcttgtaagtactgtggagtgacgaatcctgcttgt
gtagttaggtgcaatgtgccatcttgccgtaagtggttctgtaattccagaggaaacact
tcgggctcacatattgttaatcacctggtgcgagcaaaacacaaggaggtgtgtcttcat
aaagatagtccacttggagaaacaattctagagtgctacaattgtggatgccgaaatgtc
tttcttcttgggttcatttctgccaagacagagagtgtcgtcgttcttctctgtagagaa
ccttgtctaagtgttaatgcattaaaggatatgaactgggacctcagtcagtggtgccca
ctcattgatgacaggtgctttttacagtggcttgttaaggtcccttccgagcaagaacag
ttgagagcgcgccagatcagtgctcaacaaatcaacaaagtagaagaattgtggaagaca
aatcctgatgctaccctggaagatcttgagaagcctggtgtggatgatgagcctcagcct
gttgccttgaagtatgaagatgcctatcagtatcaaaacatatttgcaccattgatcaag
cttgaagctgactatgataagatgatgaaagagtctcaaagtaaagacaatcttactatt
cgatgggatattggtctcaacaagaagcgcgttgcatattttgtgttcccgaaggaagat
aatgagttgcgtcttgtacctggtgatgagctaaggctacgatattcaggggatgcagct
catccagcctggcaatctgtggggcacgtggtaaaattaacagctcaagaagaggttgcg
cttgaactacgtgccagccagggggttccaatcgatgtcaaccacgggtttagtgttgac
ttcgtttggaaaagtacgagttttgatcggatgcaaagtgcaatgaagacctttgcagtg
gatgagactagtgtcagtgggtatatttaccatcatctgttaggtcatgaagttgagatg
cagatggtccggaatacacttccacgtcgttttggagctcctggtcttccggagcttaat
gcatctcaggtttttgctgtaaaaagcgttcttcaaaagcccatcagtttaattcaaggc
ccacctggaactggaaaaactgtcacctctgccgccattgtgtatcatatggcgaaacaa
ggccaaggacaggttttggtctgtgcccccagtaacgtggctgtggaccaattagctgag
aagataagtgctaccggtctaaaggtggtcaggctctgtgccaagtcgagggaagctgtc
agttctcctgtcgagcatttaacccttcactatcaggttcgccatcttgacacgtctgag
aagagtgaacttcataagttacagcaactgaaagatgaacaaggagagctctccagtagt
gatgagaagaaatataaagctctgaaaagggcaacagagagggaaatagctcagagtgct
gatgtcatttgttgcacatgcgttggtgctggagatcctagattggctaatttcagattc
cgccaggtgctcattgatgaatccactcaggctactgagcctgaatgtctcattcctttg
gttcttggtgcaaagcaggctgttcttgtcggtgaccattgccagcttggacctgttatt
atgtgcaagaaagcggctcgtgctgggctggctcaatctctctttgaacgccttgtgttt
ctaggcgtgaaacctattaggttacaggtacaataccgtatgcaccctgcattgtctgag
ttcccatcaaatagcttttatgaaggtacacttcaaaatggtgtaaccgtcaatgaaaga
ctatcatcaggaattgattttccttggcctgtgccgaaccgtcccatgttcttctatgtt
cagatgggacaagaggagattagtgctagtggaacttcctatctgaatagaactgaagct
gcaaatgtggagaagattgtgactacatttctgaagagtggggtagtccctagtcagatt
ggggtcataacaccatatgagggtcaacgggcatatatagtgaattatatggcaagaaat
ggttccctaagacaacaactctacaaggaaatcgaggttgcaagtgtagattcatttcaa
gggagggagaaggattatattattttgtcatgtgtcaggagtaatgaacatcagggcatt
gggttccttaatgatccacgcaggcttaatgttgctcttacccgtgctcgttatggtatt
gttatcctgggaaatcctaaagtcttgagcaaacagcctctgtggaatggtttgttaaca
cactacaaggagcacgagtgcttggttgaaggtcctctcaataacttaaagcagagcatg
gttcaatttcagaagcccaaaaagatctacaatgagcgcagactcttctttggtggtgga
cctggagcagttcaaggtgacagtttcggatctgcttcaggccccagtgctgacaggaga
aatagtcgtcctaggggttcttatatggcacctggtgtacccaatggtactcagaaacct
ggtgttcatcctgctggttatccgatgcctcgggttccctttcccccttaccatggaggc
cctccacaaccatatgcaattcctactcgtggtgctgtccatggacctgttggagctgtt
cctcatgttccacaaccaggcagccggggttttggggctggacgtggcaacgccaatgcc
ccaattggtagtcatctccctcaccatcaagggtcccagcagccggtcggaagtattgga
tctaacttcaactttcctgcattagataatccaaacagtcagccttccatcggaggacct
ttatctcaacctggatatgcttctaatatggctatccagggaccaggccagtcattccgc
gatggactttctatgggtagcatgtcacaggattttgtgggagatgatttcaagagccag
gggtctcatgttccatataatgttgctgacttctctacacaggcttctcaaggtgcatat
gctgttgattattcaactcaaggagcacaggctgggtttccagggaattttttaaaccag
aactctcaatctggatactcccgttttggttcaggaaatgaattcatgtctcaggattat
atggctcatggttcgcaaggtctatttacgcaagctggatataatgatccattacaagat
gatggttcacagaatcattttggcatgtccaatgttaattctcttcagtctcagagttta
ctcaatccaatttattcccagccatttgcgcactacaatacacagccattgaacttgcaa
agttctcagcctcaacagcagcaagggccacaaggccagtgcttccaaaatcagaaactc
cagtacaatagttga

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