KEGG   Sphingopyxis macrogoltabida EY-1: AN936_21285Help
Entry
AN936_21285       CDS       T04104                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
smag  Sphingopyxis macrogoltabida EY-1
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:smag00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AN936_21285
Enzymes [BR:smag01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AN936_21285
DNA repair and recombination proteins [BR:smag03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AN936_21285
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
4517402..4519918
Genome map
AA seq 838 aa AA seqDB search
MARADPLARYNAKRDFKLTPEPAGKVEKGAGNRFIVQKHDATRLHYDFRLEIDGVLKSWA
VTKGPSADPADKRLAVRTEDHPMSYADFEGVIPKGEYGGGTVMLWDRGTWAPIAGKSAKD
IEKGHLHFTLDGERMKGEWLLVRMKPRPGEKRENWLLRKVDDAFAGGADDLVGRQLTSVL
TDRTMADIAADKGGEQSLQGAKGAAFAKKMAAATAHNKQVAKPVAKPKARGKPPKFRPLQ
LATLVDAVPGGNGWFHEIKYDGYRAEIAAAGSDVRVFTRNGLDWTDKFAPLVRHIAALDL
PPCLIDGEIVAYGKDGNPDFSALQAVLKRGHGEQGEDNDLSFFAFDLLEESGKSLAKLGN
LERKERLEALLRHAQPPIAVADHVIGAGETLYAAMCGAGQEGIISKRADAAYSGRRSKNW
VKVKCTRRQEFILVGWNPSSAKGRAFASLLLAQREKGKLVYKGNVGTGFDAATMADLAKK
FAARERKTAPLDVDATVARKVHWLKPDLVAEIAFAEFTAGGSVRHASFLGLRRDKEAKEV
TPEKQQPAPEPASDVTISSRDRVIFPEAKATKGDLADYYAAIAPVMLPHMARRPISLVRC
PQGRAKKCFFQKHDSGSFGDHVHHIPIREKDGGHEDYLYVDDADGILACVQMGTIEFHGW
GSHVDALEKPDRMVFDLDPDEGLAFADVKKAAADIRRQLADIGLVSFAMLSGGKGVHVVV
PLDPGHDWDAHKDFSKRFAEALSLAEPDRYVATMSKAKRKGKIFIDYLRNQRGSTAIMPY
SARAREGAPVAVPVGWDALADIESAGAWTIKDAAALLERAGSAELKGWGFASQKLPAL
NT seq 2517 nt NT seq  +upstreamnt  +downstreamnt
atggcgcgcgccgatccccttgcccgatataatgccaagcgcgacttcaagctgaccccc
gaaccggcagggaaggtcgaaaagggagccggcaaccgcttcatcgtccagaagcatgac
gcgacgcggctccactatgatttccgcctcgaaatcgacggtgtgctcaaaagctgggcg
gtcaccaaaggcccgagcgccgatccggccgacaagcgcctcgcggtgcgcaccgaagac
catccgatgagctatgccgatttcgaaggcgtgatccccaagggcgaatatggcggcggc
acggtgatgctgtgggatcgcggcacctgggcgcccatcgcgggcaagagcgccaaggat
atcgaaaagggtcatctccatttcaccctcgacggcgaacggatgaagggcgaatggctg
ctcgtccgcatgaagccgcgcccgggcgagaagcgcgagaactggctgctgcgcaaggtc
gacgatgcttttgccgggggtgccgacgacctggtggggcgtcagctcaccagcgtcctc
accgaccggacgatggccgacattgccgccgacaagggcggcgagcagtcgctgcagggc
gcgaagggcgcggctttcgcgaagaagatggccgccgccacggcacataacaaacaggtc
gccaaacccgtcgccaaaccgaaggcacgcggcaagccgccgaaattccgcccgctccag
ctcgcgacgctcgttgacgcggtgcccggcggcaacggctggttccacgagatcaaatat
gacggctatcgcgccgaaatcgctgcggcaggctccgacgtccgagtcttcacgcgcaac
ggcctcgactggaccgacaagttcgccccgctcgtccgccacatcgcggcgctcgatctg
ccgccgtgcctgatcgatggagagatcgtcgcttatggcaaggacggcaatcccgacttc
tcggccttgcaggcggtgctgaaacgcggtcacggcgaacagggtgaggataatgacctt
agtttttttgccttcgacctgctcgaagaaagcggcaaatcgcttgccaaactcggcaat
ctcgaacgcaaggaacggctcgaagcgctactccgccacgcgcagcccccgatcgcggtc
gccgatcatgtcatcggcgccggcgagacgctctatgccgcgatgtgcggcgccgggcag
gagggcatcatctcgaagcgcgccgacgccgcttattcgggccgccgctcgaaaaactgg
gtgaaggtcaaatgtacccgccgtcaggagttcatcctcgtcggctggaacccgtcatcg
gccaagggccgcgcctttgcctcgctcctcctcgcccagcgcgagaaaggcaagctcgtc
tacaagggcaatgtcggcaccggtttcgacgccgcgacgatggccgacctcgcgaagaaa
tttgcggcgcgcgaacgcaagacggcgccgctcgacgtcgatgcgacggtcgcgcgcaag
gtccattggctgaagcccgatctggtcgccgaaatcgcctttgccgaattcacggcgggc
ggctcggtgcgccatgccagttttctcggcctgcgccgcgacaaggaggcgaaagaggtg
acccccgaaaagcagcagccggcgcccgaaccggcgagcgacgtgacgatcagcagccgc
gaccgcgtgatctttcccgaggccaaggcgaccaagggcgatctcgcggactattacgcc
gcgatcgcaccggtgatgctgccgcacatggcgcgccgcccgatcagcctcgtccgctgc
ccgcaggggcgcgcgaaaaaatgcttcttccagaaacacgacagcggttcgttcggcgac
catgtccaccacatcccgatccgcgagaaggacggcgggcacgaggattatctttatgtc
gacgacgccgacggcattcttgcctgcgtccagatggggacgatcgagttccacggctgg
ggcagccatgtcgacgcgctcgaaaagcccgaccgcatggttttcgacctcgaccccgac
gaagggctcgcgttcgccgatgtgaaaaaggcggccgccgacatccgccgccagctcgcc
gatatcggcctcgtcagcttcgcgatgctctcgggcggcaagggggtgcatgtcgtcgtg
ccgctcgatccggggcatgactgggacgcgcacaaggatttctcgaaacgctttgccgaa
gcgctgagcctcgccgagcccgaccgctatgtcgcgacgatgagcaaggcgaagcgcaag
ggcaagatcttcatcgattacctccgcaaccagcgcggcagcaccgcgatcatgccttac
tcggcccgcgcccgcgagggcgcgccggtcgcggtgccggtcggctgggatgcgctcgcc
gatatcgaaagcgccggggcgtggacgatcaaggatgccgccgcactgctcgaacgcgcg
ggcagcgccgaactcaagggctgggggtttgcgagccagaaactgccggcgctgtag

DBGET integrated database retrieval system