Serratia marcescens SM39: SM39_0736
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Entry
SM39_0736 CDS
T03592
Symbol
uvrB
Name
(GenBank) excinuclease of nucleotide excision repair, DNA damage recognition component
KO
K03702
excinuclease ABC subunit B
Organism
smar
Serratia marcescens SM39
Pathway
smar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SM39_0736 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smar03400
]
SM39_0736 (uvrB)
DNA repair and recombination proteins [BR:
smar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SM39_0736 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SM39_0736 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
SBDS_domain_II
AAA_22
UB2H
DUF87
Motif
Other DBs
NCBI-ProteinID:
BAO32793
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All DBs
Position
749062..751074
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AA seq
670 aa
AA seq
DB search
MSKLFKLHSDFKPAGDQPEAIRKLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMIIDQRSILRRLAELQ
YSRNDQAFQRATFRVRGEVIDIYPAESDELALRVELFDEEVERLSLFDPLTGQIEQVVPR
FTIYPKSHYVTPRERIMQAMEEIKVDLADRRKVLLANNKLLEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRYLSGRAEGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMFKGDRARKET
LVEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGGDLIDQVVRPTGLLD
PIVEVRPVATQVDDLLSEIRKRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDRITDSMAKAIGETERRRAKQQAYNEANGIVPQGLNKKIGDILQIG
QPVNRAKSKGKGKAADGGASLQNLTPKALDQKIRDLEAQMYTHAQNLEFEQAAALRDQIH
QLREQFIAIS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaacttttcaaactgcattctgatttcaaaccggccggcgatcagccggaagcc
atccgcaagctggaagaggggctggaagacggcctggcgcaccagacgctgctgggggtc
accggttcgggcaagacattcaccatcgccaacgtgatagccgatctgaatcggccgacc
atggtgctggcgccgaacaagacgctggcggcgcagctgtacggcgagatgaaagagttt
ttcccggagaatgcggtggaatacttcgtctcctactatgactactaccagccggaagcc
tacgtgcccagctccgacaccttcattgaaaaagacgcttcggtgaacgagcacatcgag
cagatgcgcctttccgccaccaaggcgctgctggagcggcgcgacgtggtggtggtggcg
tcggtgtcggcgatctacggcctgggcgatccggatctttacctgaagatgatgctgcac
ctgacccaggggatgatcatcgatcagcgatccattttgcgccggctggcggagctgcaa
tattcccgcaacgatcaggccttccagcgcgctaccttccgcgtgcgcggcgaggtgatc
gacatttacccggcggagtcggacgagctggcgctgcgcgtcgagctgttcgacgaagaa
gtggagcggctgtcactgttcgatccgctgaccgggcagatcgagcaagtggtgccgcgc
tttaccatctacccgaaatcgcactacgtgacgccgcgtgagcggatcatgcaggcgatg
gaagagatcaaggtcgatctggcggaccgccgcaaggtgctgctggccaacaacaagctg
ctggaagagcagcgcctgacgcagcgcacccagttcgatctggagatgatgaacgagctg
ggctactgctcgggcatcgaaaactactcgcgctacctgtccgggcgcgccgagggcgag
ccgccgccgacgctgttcgactacctgccggcggacggcctgctggtggtcgacgaatcc
cacgtcaccattccgcagatcggcgcgatgttcaagggcgaccgcgcgcgcaaggaaacg
ctggtggagtacggcttccgcctgccgtcggcgctggacaaccgcccgctgcgcttcgag
gagttcgaggcgctggcgccgcagaccatctatgtctccgcgacgccgggcaaatacgag
ctggagaaatccggcggcgatctgatcgatcaggtggtgcggccgaccgggctgctggat
ccgatcgtggaggtgcggccggtcgccacccaggtggacgatctgctctccgagatccgc
aagcgcgcggcgatcaacgagcgcgtgctggtgaccaccctgaccaaacgcatggcggaa
gacctgaccgaatacctggaagagcatggcgagcgcgtgcgctacctgcactcggacatc
gataccgtggaacgggtcgaaatcatccgtgacctgcgtctgggcgagttcgacgtgctg
gtgggcatcaacctgctgcgtgaggggctcgacatgcctgaggtgtcgctggtggcgatt
ctggacgccgacaaggaaggtttcctgcgttccgagcgttcgctgatccagaccatcgga
cgcgcggcgcgtaacctgaacggcaaggcgatcctgtatggcgatcgcatcaccgattcg
atggccaaggcgatcggtgaaaccgagcggcgccgcgccaagcagcaggcctacaacgaa
gccaacggcatcgtgccgcaggggctgaacaagaagatcggcgacattctgcagatcggc
cagccggtcaaccgcgccaagagcaaaggcaagggcaaggcggcggacggcggcgcttcg
ctgcagaaccttacgccgaaagcgctggatcagaaaatccgcgatctggaagcgcagatg
tacacccacgcgcaaaacctggagttcgagcaggcggctgcgctgcgcgaccagatccac
cagctgcgcgagcagtttattgcgatttcctga
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