KEGG   Sinorhizobium medicae: Smed_3206
Entry
Smed_3206         CDS       T00555                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
smd  Sinorhizobium medicae
Pathway
smd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Smed_3206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smd03021]
    Smed_3206
   03019 Messenger RNA biogenesis [BR:smd03019]
    Smed_3206
Transcription machinery [BR:smd03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Smed_3206
Messenger RNA biogenesis [BR:smd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Smed_3206
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB AAA_25 NACHT DUF6360 Spore_III_AA AAA
Other DBs
NCBI-ProteinID: ABR62030
UniProt: A6UEF0
LinkDB
Position
complement(3381576..3382841)
AA seq 421 aa
MAEMKLQELKNKTPTDLLALAEELEVENASTMRKQELMFAILKMLAQQEIEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSARVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAT
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPS
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKTNGDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaagaacttaagaacaagactccgaccgaccttctggccctt
gccgaagagctcgaggtggagaatgccagcacgatgcgcaagcaggagctgatgttcgcg
atcctcaaaatgctggctcagcaggagatcgagatcatcggcgagggtgtcgtcgaggtc
ctgcaggacggatttggcttcctgcgctcggcgaatgcgaattatcttccaggcccggac
gatatctacatttcgccttcccagatccgccgcttctcgctgaagaccggcgacacggtc
gagggtccgatccgcggacccaaggaaggcgagcgctatttcgcactgctgaaggtcaac
acgatcaatttcgacgatccggagaagatccgccacaaggtgcacttcgacaacctgacg
ccgctctatccgaacgagcgcttcaagatggaactcgaggtcccgacctccaaggacctg
tcggcacgtgtcatagatctggtcgcgccgctcggcaaaggccagcgtggcttgatcgtt
gcgccgcctcgtaccggtaaaacggttcttctgcagaatatcgcgcattcgatcacggcg
aatcacccggagtgctatctgatcgtcctcctgatcgacgagcggccggaggaagtcacg
gacatgcagcgttcggtcaagggcgaggtggtatcctcgaccttcgacgagccggcaaca
cgccacgtacaggtcgcggaaatggtgatcgagaaggcaaagcgcctcgtggaacatggg
cgcgatgtggtgatcctgctcgattcgatcactcgtctcggccgcgcatacaacacagtc
gttccctcatcgggcaaggtcctgaccggtggtgtcgacgccaatgcgctgcagcgcccc
aagcgcttcttcggcgcggctcgtaacatcgaggaaggcgggtcgctgacgatcattgcg
acggcgctgatcgacaccggcagccgaatggatgaagtgatcttcgaagagttcaagggc
accggcaactcggaaatcgttctggaccgcaaggtggcagacaagcgcatcttcccgtca
atggatattctcaaatccggcacgcgtaaggaagatctcctggtcccgcgtcaggacctg
cagaagatcttcgttcttcgccgcattctcgcgccgatggggacgaccgatgcgatcgaa
ttcctcatcgacaagctcaagcagacgaagacgaacggcgacttcttcgactcgatgaat
acatag

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