KEGG   Sinorhizobium meliloti RMO17: DU99_30115
Entry
DU99_30115        CDS       T03395                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
smer  Sinorhizobium meliloti RMO17
Pathway
smer03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:smer00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DU99_30115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smer03400]
    DU99_30115
Enzymes [BR:smer01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DU99_30115
DNA repair and recombination proteins [BR:smer03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DU99_30115
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AIM03434
LinkDB
Position
pSymB:1015504..1017390
AA seq 628 aa
MRQRAKAPHPSEGVPNGAQGRKAEVDSRRTASPVDRLADLGATQSAVPEFIEPCHPTLKK
RPPDGADWVHEIKLDGYRAQLHINGGKTTIYTRSGLDWTTEFKAIATAAEDLAGHDAVMD
GEVTVFGKNGLPDFQALRRELAKRSSPNLTFQAFDLLYLDGYDLRRVPLIERKRVLRELI
GDAAGTIAYVDYLELEEGEPVYRHACKMGLEGIVSKRKDAPYRSGRQEIWTKTKCTKRDA
FPIVAFVEKLGAHPRRIASLYLGRWEGDRLVYAGKAQTGYTLTAAREVRERLNPLIIGKS
PLSHPINKPKATWVEPQVYAEIDYGGVTDDGLLREPVFKGLQDVSPAAGKPRPTTAPASI
RVPRANILQLLPEAVVPSKEELANYWTRVSDRALHFLGGRPLKLVRHIHGTTFYHKGPLP
PIPSEVHQLRIEKREGGAGVRLWVDDLAGLLGLVEIGAVELHPWAATVDNIEHADALIFD
LDPGEGVSWAFVVETALRLREFLEAEGFKTWPKLTGGKGVHLMSPLTAKMTHNAAHAYAK
RLAQQFASTDPDRYVTSAQLSHRPGKLFLDYLRNGRGTTAVGTYSPRARSGFPVAAPVTW
RDIERGIRPDAFTIERPPKRRAVLASAS
NT seq 1887 nt   +upstreamnt  +downstreamnt
ttgaggcagcgtgccaaagccccgcacccctctgaaggcgttccaaacggtgctcaggga
cgaaaagccgaggtcgacagtcgacggactgcgtcccctgttgatcgtctggcagatctc
ggcgcaactcaatccgccgtcccagaattcattgagccctgccacccgacgctgaagaag
aggccgccggatggcgcagactgggttcatgagatcaagcttgatggctatcgagcgcaa
ctgcacattaatggcggcaagaccacgatctacacgcggagcgggctggattggacgacg
gaattcaaggcgatcgcgacggctgcggaggatcttgccggtcatgacgcggtaatggat
ggagaggtcactgtcttcggcaagaacggacttcccgattttcaggcacttcgccgagag
ctcgcgaaacgctcgtcgccgaatctgacgtttcaagcgttcgacctgctttatctggac
ggctacgacctccggcgcgtaccgctgatcgagcgcaaaagagtgctgcgcgagctaatc
ggagacgcggccggcaccatcgcctatgtcgactatctcgagctcgaagagggagagccg
gtctatcggcacgcatgcaagatgggcctggagggaattgtctcgaaacgcaaagatgcg
ccctaccggtcgggtcggcaggaaatctggacaaagacgaagtgcacgaagcgcgacgcc
tttccgatcgtcgccttcgtcgaaaaactcggcgcacacccgcggaggattgcctcgctt
tatctcgggcgctgggagggcgatcgcctggtttatgccggtaaggcccaaaccggctac
accttaacggcggcccgcgaggtgcgggagcggctcaatcccttgatcatcggcaagagc
cccctctcccatcccatcaacaagcccaaggcgacctgggtcgagccgcaggtctacgct
gagatcgactatggcggggtgacggatgacggcttgctgcgggagccggtgttcaaaggg
ttgcaggatgtgtcgccggctgcaggaaagccgcgaccgactactgcacctgcctcgatc
cgagtcccgcgagcgaacattttgcagttgctgcccgaagccgttgtgccctcgaaagag
gagcttgcaaactactggacgcgtgtctccgatcgggccctgcatttcctcggcggccgc
cccttgaagctcgtacgacacatccacggcaccaccttctaccacaagggaccgctgccg
ccgatcccgtccgaggtccatcagcttcgcattgagaagcgagagggcggtgcaggggtt
cggctttgggtcgatgatctcgccggattgctggggcttgtcgagatcggcgcggtcgaa
ctgcatccctgggcggcgaccgtcgacaatatcgaacacgccgacgcgctgatcttcgat
cttgatcccggcgaaggcgtgtcatgggcgttcgtcgtcgaaaccgccttgcggctgcgg
gaatttcttgaggcggagggcttcaagacatggccaaagctcaccggcggcaagggcgtt
cacctcatgagccctctgactgcgaagatgacccataacgcggcgcacgcctatgccaaa
cgcttggcgcagcagttcgccagcaccgatcccgaccgctacgtcacgtcggcacagctt
tcgcaccgaccgggcaagctttttctcgactatctgaggaacggccgcgggactacggcc
gtcggcacctactctccgagggcccgctcaggatttcccgtcgcggctccggttacctgg
cgcgacatcgagcgcgggataagacctgatgcgtttaccatcgagcgtccgcctaagcgt
cgcgcagtcctggcgagtgcgagctga

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