Sinorhizobium meliloti AK83: Sinme_4544
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Entry
Sinme_4544 CDS
T01521
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
smk
Sinorhizobium meliloti AK83
Pathway
smk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sinme_4544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smk03019
]
Sinme_4544
Messenger RNA biogenesis [BR:
smk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sinme_4544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
UTP25
Motif
Other DBs
NCBI-ProteinID:
AEG56213
LinkDB
All DBs
Position
2:complement(876163..877677)
Genome browser
AA seq
504 aa
AA seq
DB search
MSTFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPM
IEKLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTE
QLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKN
RQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQT
LTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD
IEKLMGIQIAVASGEAPADQARPSKGRGGRGNGQPRGNAQPRGNGAGQRQGGPRRDRPQR
QAAAGGFAGDELLRDERSHERRDQRAVGHGPADGRPEGHRNHKAQKHHGRPGPQQAGRRG
SEQSGERNGGGNRPQRADGRGHQR
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
ttgtccactttcaaagagcttggcctctccgagcacatcgtggcgacactctccgccaat
ggtttcgaaaagccgacgcccatccaggctcaagccattccgctggtcctgaaagaccat
gacctcatcggtcttgcgcagacgggcaccggcaagaccgctgcgttcggcctgccgatg
atcgaaaagctcgtagccgatggcagacgtcccgatccgcgcaacattcgcgctctcgtg
ctcgcacctacccgtgaactggtgaaccagatcgcggccaacctgaagcttttcgtaaag
aagagcccgctcaagatcggcctcgtcgtcggtggcgtttcgatcaacaagcagaccgaa
cagctcgcccgtggcgtcgacattctcgtcgcgacccccggccgcctgctcgaccttgtt
tctcgcaaggcggtgacgctgacacaggctcgctacctcgttctcgacgaggctgaccag
atgctcgatctcggcttcatccacgacctgcgcaagatttccaagctggtgccgaagaat
cgtcagacgctgctcttctccgcaaccatgccgaagctgattgccgagcttgccggcgaa
tatctgaccgatccggtcaaggtcgaagtctcgcctccgggtaaggccgccgacaaggtc
gaacaatatgtgcatttcgtccccggcaaggacctgaagacgacgatcctgaagcagacg
ctgactgccaatcccgatgggctgtcgctgattttcagccgcaccaagcatggcgccgag
aagctgatgaagcatctcgaccatgtcggcttcaaggccgcctcgatccatggcaacaag
agccagggccagcgggagcgcgcgctgaaggcattccgcgacggtgagatccgcgtgctc
gtggcgacggatgtggccgctcgcgggatcgacattccaggcgtcacccacgtctacaac
tacgacctgccggaagtgcccgacgcctatgtgcaccgtatcggccgcacggcccgtaac
ggccgcgacggcatcgcgatcgcattctgcgcgccggacgaaatccgcctgctgcgggac
atcgaaaagctgatgggcatccagatcgccgtcgccagcggcgaagcgcccgccgaccag
gcgcgcccctccaagggacgtggcggtcgcggcaacggtcagcctcgtggtaacgcccag
cctcgcggcaatggcgcagggcagcgccagggcggaccccgccgcgatcggccgcagcgc
caggcggcagccggcggattcgccggcgatgaactgctgcgcgacgagcgctcgcacgag
cgccgcgaccagcgtgctgtcgggcatggaccggcggacggacggccggaaggccaccgc
aatcacaaggcgcagaagcaccatgggcggcccggaccgcagcaggccggccgccgtggg
agcgaacagtcaggcgaacgcaacggcggcggcaatcgaccgcagcgtgccgacggtcgc
ggccatcagcgctag
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