Selaginella moellendorffii: SELMODRAFT_422836
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Entry
SELMODRAFT_422836 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SELMODRAFT_422836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_422836
Enzymes [BR:
smo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SELMODRAFT_422836
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
SELMODRAFT_422836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
BRCT
PTCB-BRCT
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_IV
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
9655059
NCBI-ProteinID:
XP_002983499
JGI:
422836
UniProt:
D8SJP8
LinkDB
All DBs
Position
Unknown
AA seq
1172 aa
AA seq
DB search
MGENTVRFSAVSDMLERISKSKKLPVKRKTFRTFLDHFYTDREYFSVMRLVLPELDRERG
NYGLKESVLAKCLADALGLAKGSSDADKLVNWRKGGSSVGKNAGNFALVAAEIVGSRQSH
TSGGLTVKRVNELLDQLAEVKSREEKSKVLAEFINKTNPVEMKWLVMIILKDLKLGISEK
TVFKEFHPDADEVYNKTCDLKLVCEKLVDPKVRFKRQDIEVGKAVRPQLASRVKNAEDAW
KRMRGKRVIAECKFDGDRCQVHKDGNEVHFFSRSSIDHVEFAAAMSSVICENVKASKCIL
DGEMVVWNRVTNKFAEFGTIHAVAKNAKDGVQSDEQLCYIVFDILYLDDCSVIHQPLCER
QKLLEQKVTTVPGRLELLQPDRRNCGGQLWSITPQSAADVEKFFLMTVDNREEGIVVKDF
DSKWEPGDRSGKWMKLKPDYVKESEMDVLIIGGYYGSGRRGGDVAQFLLGIAERPASGYP
TKFHSFCKVGTGLSDEECRVLVDKLRPYFRKYDKNTKPPSYYVVTNNAKERPDVWIEQPD
KSVLLEVKSDIRKIKSEVFASPYSLRFPRVTRVRYDKPWNECLDIQELVRMVAEDAGAGV
NGDGDGGRKKKQERAPKKKAPKLPLLAPHMQQTDVSGVKKVSDMLSGLVFFLVNFKLEEK
ERFHKLVAEYGGKFSMNLNGDVTHVLAESPKGLLYETATKRGDVIHSSWFMDSIAAKELL
PLRPKYMLHLSYKTRETLKDTLDEFGDHYFVEVDEADMKQLFGRMRVEDLSVNEKDVDEH
RGSLGDRKNIFEGCSFYFYYPREAAVADEAMIAGVVLRRLEVEVELRKGAVKPSLAGATH
MIVFWDSERDHSEAGLSFSENKLVSSKKLRVLSHRWLEEALRRDSVPPEDDYDVRQALGS
RLVEESPPRQEEEPELLKENSEHEAGDEEQDEERVSVFDTLVLEEMDGPENEELPPKKKR
HLQGMATPTLAKTLTLPTTSSSLDLWPTTQEAGANPTLVISETLKLPSFEPQKLAACSET
LKLPSLEPRKLAACSETLKLPETPPATVITETVKLPSFEPDKAFDNLLADFAFLPSITRE
APAKGFAAPQQNKPRIVQEEVAKEDTAMKKSKASYKIEVPVEGFAGGFAAPQRNEPGAFQ
ENGSSSREEIAMPMPAKKKNKTSLKDVVRNLL
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgggggagaacacggtgagattcagcgccgtcagcgacatgctggagcgcatttccaag
agcaagaagctgccggtgaagcgcaagaccttccgcacctttctggatcacttctacacc
gatcgcgagtatttcagcgtgatgcgcctagttcttccggagctggacagggagcgcggc
aactacggcctcaaggaatcggtgctggccaagtgcctcgccgacgcgctgggcctggcc
aagggatccagcgacgccgacaagctcgtcaactggcgcaaaggtgggtcgagcgtcggg
aagaatgccggtaactttgcgctggtcgccgccgagatcgtgggcagccgccagagccac
acctcgggcggcctcaccgtcaagcgcgtgaacgagctcctggatcagctggccgaggtg
aagagccgcgaggagaaatccaaggtcctggcggagttcatcaacaagaccaatcccgtg
gagatgaagtggctggtgatgatcatcctcaaggatctcaagctgggcatcagcgagaag
accgtcttcaaggagttccaccccgacgccgacgaggtgtacaacaagacgtgcgatctc
aagctggtttgcgagaagctggtggatcccaaggtgcgattcaagcgccaggacatcgag
gttggcaaggcggtgaggccgcagctcgcgtcccgggtgaagaacgccgaggatgcgtgg
aagaggatgagggggaagagggtgatcgccgagtgtaagttcgatggtgatcgctgccag
gtccataaggatgggaacgaggtccacttcttctccaggagctccatcgatcacgtcgag
tttgccgcggccatgagcagcgttatctgcgagaacgtcaaggcgtcgaagtgtatcctc
gacggggagatggtggtgtggaaccgagtgacgaacaagtttgccgagtttgggacaatt
catgcggtggccaagaatgccaaggatggcgtccagagcgacgagcagctttgctacatc
gtcttcgacattctctacctggacgattgcagcgtgattcaccagcctctctgcgagcga
cagaagctgctcgagcagaaggtgacgactgtccctgggcggctcgagctgcttcagccg
gatcggaggaactgcggtggccagctctggtcgatcactccacagtccgctgccgacgtc
gagaagttcttcctgatgaccgtggataacagggaggagggaatcgtcgtcaaggacttc
gattccaagtgggagcctggggacaggagtggaaagtggatgaagctcaagcccgactac
gtgaaggagagcgagatggatgtgctgatcattggtggctactatggatcgggacggcgg
ggtggtgatgtggctcagtttcttctcggcattgccgagcgtccagcgagcgggtatccg
accaagttccactcgttttgcaaggttggcacggggctcagcgatgaagagtgccgagtt
ttggttgacaaactaaggccgtatttcagaaaatatgacaagaacaccaagcctccgagt
tactacgtggtgactaacaacgccaaggagcgcccggacgtgtggatcgagcagccggac
aagtctgtgctcctggaggtgaagagcgatatccgaaagatcaagtcggaggtgtttgcc
tcgccttacagcctccgctttccaagagttaccagggtccggtacgacaagccttggaac
gagtgcttggatatccaggagcttgtgaggatggtggcggaggacgcaggtgctggtgta
aatggagatggtgatggcggccggaagaagaaacaggagagggctcccaagaagaaagct
ccaaagcttcctttgctggcgcctcatatgcagcaaacagacgtttccggtgtgaagaag
gtgtccgacatgctcagcggcctggtcttcttcctggtgaatttcaagctcgaggagaag
gagaggttccacaagctggtggccgagtatggagggaagttttcgatgaacttgaatggc
gacgtaactcacgtccttgccgagagtccgaagggccttctgtacgagaccgcaaccaag
cgaggggacgtgatccattcctcgtggtttatggactcgattgctgcgaaggagctcctt
ccgctcaggcccaagtacatgcttcacctctcgtacaaaacgagggagactctcaaggac
actttggacgagtttggagatcactactttgtggaagtggacgaggcagacatgaagcag
ctgtttggacgcatgcgagtcgaggacctctcagtgaacgagaaagacgtggacgagcac
aggggcagccttggcgacaggaagaacatctttgaaggctgctcgttctacttttactat
cctcgcgaggcggcagtagcagatgaagcgatgattgctggagtcgttctcaggaggctg
gaagtggaagtggaattgcgcaagggtgctgtgaagccgtctcttgctggagcgactcat
atgatcgtgttctgggacagcgaaagggatcacagtgaagccggtctctctttctcggag
aacaagctggtttcaagcaagaagctgagagtcttgagtcacagatggttggaggaggcg
ctgaggagggacagtgttcctccggaggacgattacgacgtgaggcaggctttgggatct
cggctggtggaagagtctcctccacgacaagaagaagaaccagagcttttgaaagaaaac
tcggagcatgaagccggagatgaagagcaggatgaggagagggtgagtgtttttgatact
ctagttttggaagagatggacgggccggagaacgaagaactcccaccgaagaagaagcgg
cacttgcaagggatggctaccccgactctggcgaagacgctcactttgccaactacatca
tcgagtttggacttgtggcctaccacgcaagaagctggagcaaatccgacactggtgatc
tcggagactttgaagcttccaagtttcgagccacagaagttagcagcttgctcggaaact
ttgaagcttccaagtcttgagccacggaagttagcagcttgctcggagacattgaaactt
cccgaaactcctccagcgacagtgatcaccgagactgtgaagcttccgagctttgagccg
gacaaggcgtttgacaacttgctggcggattttgcgttccttccctcgatcacaagggaa
gctcctgcgaaaggatttgcagctccacagcaaaacaagccacggatagttcaagaggaa
gtagcgaaggaagacacagcgatgaagaagagcaaagcaagctacaagatagaagttcct
gtggaaggatttgctggaggatttgctgctccacagcgaaacgagccaggggcgtttcaa
gagaatggcagctcctcccgggaagaaatagcgatgcccatgcccgccaagaagaagaac
aaaacaagcctcaaggatgtggttcgcaacttactgtaa
DBGET
integrated database retrieval system