Sordaria macrospora: SMAC_06280
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Entry
SMAC_06280 CDS
T01610
Name
(RefSeq) uncharacterized protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
smp
Sordaria macrospora
Pathway
smp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMAC_06280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smp03019
]
SMAC_06280
Messenger RNA biogenesis [BR:
smp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SMAC_06280
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SMAC_06280
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
EAD9
WKF
DUF1192
Transcrip_reg
TEDC1
Cep57_MT_bd
Med10
Motif
Other DBs
NCBI-GeneID:
10803284
NCBI-ProteinID:
XP_003345879
UniProt:
F7W6C3
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MAARKLAQEVDKCFKKVAEGVAEFEAIYEKIEQSNNPAQKDKLEDNLKREIKKLQRLRDQ
IKTWAASNDIKDKAPLLEHRRLIETQMEKFKAVEKAMKTKAYSKEGLSAAAKLDPKEQAK
LEAGEFLSQMVDELEQQIETLEAESESIQATMKRGKGQGAKADRISEIERIIERHKWHQG
KLELIRRSLENGGVETEQVNDLEESIRYYVTDGMNEDFMDDEGIYDELNLEEEEDAYGMN
VDNDKGSSQDAQSVQDEPEPEPKPASVPAAKQRTPAETVAASSTRRSSAQLKSPLPTLAT
VHTNTLTSISNTPASNAPMKPASLPTRPAEGLKYASAAAAAAASDKSGVGIAPLPPPPTA
NSSLPASHVKTSAANSPSVATVQPVSQERIANAVPPAAVASVSNTPATSKAEPAKNVTSR
NKAPAPAPAPAPAPAAVATTSKATPEPEPVETQPKGRNSPHPCQTSPTNVCTVPQTNGTS
NGIKPIEEAEEDESIYHLPASLQDLVESYEVTKKCPAPLGSPATQRMHTAALANKPNSLD
TELPRPYYPDVRYHTHNQFPQEPLAIFEDPRLYQRIDPDTLFYVFYYKQGTYQQYLAAKA
LKDQSWRFHKQYQTWFQRHEEPKSITEEFEQGTYRFFDYESTWMNRRKADFKFTYKFLED
EV
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccgaaagcttgcgcaagaagtcgacaagtgcttcaagaaggtcgcagaaggc
gtggcggagttcgaggccatttacgagaagattgagcagtccaacaaccccgcccaaaag
gacaagctcgaggataacctcaaacgagaaataaaaaagctccaaaggctcagagaccag
atcaagacatgggcggctagtaacgacatcaaggacaaggctcctttactcgagcatagg
cgcttgatagagacgcaaatggaaaagttcaaggccgtagaaaaggccatgaagaccaag
gcgtattccaaggagggcctgtcggctgcggccaagctggaccccaaagagcaagccaag
ttggaggcgggcgaattcctcagccaaatggtcgacgagctggaacaacagatcgagacc
ctcgaggccgagagcgaatcaatacaggccaccatgaagaggggcaagggacaaggcgcc
aaggccgaccggataagcgaaatcgagcgcatcatcgaacgacacaaatggcaccagggg
aagctggagctgattcgacgatctttggagaacggcggcgtcgagaccgagcaagtgaac
gacctggaagaaagtatccgatactacgttaccgatggcatgaacgaggatttcatggac
gacgagggcatttacgatgagctgaatttggaggaagaagaggatgcctacgggatgaat
gtcgacaacgacaagggatcctcacaggatgcccagtcggtccaggacgagcccgaaccc
gagcccaagccggcgagcgtgccggcggcgaaacagcgtaccccagccgaaaccgttgca
gcatcatcaacacgacgctcttctgcgcagttgaagtcgccactaccgacattggcgaca
gtccacaccaacacgctgacaagcattagcaatacaccggcaagcaacgcacctatgaag
ccggcatcactacccacgaggccggccgagggtctcaagtatgccagtgcggcagccgcg
gcagccgcgagcgacaagagtggtgtaggaatcgcgcctctacccccgccgccaacggcc
aactcgtcgctaccagcatcccacgtgaagaccagcgcagcaaactcacccagcgtggca
acggtgcagccggtttcccaggagaggatagcaaacgcagtacccccagctgctgttgcg
tcggtttcgaataccccggcaacgagcaaagcagaaccggccaagaacgtgacttcgcgt
aacaaggcaccggcaccggcaccagcaccagcaccagcaccagctgctgtagcaacaact
tccaaagcaacacccgaaccagaacccgtggaaactcagccgaaaggtcggaacagtccg
catccatgccagacctcgcctactaacgtgtgtacagtgccccaaacgaacggtacgagc
aatggcatcaagcccatcgaggaagcggaagaagatgagtcgatttaccatctaccagcg
tctttgcaggatctggtcgagtcatacgaggttaccaagaagtgcccagcgcctttgggt
tcgcctgccacgcagaggatgcacacggcggcattagcgaacaagccgaattccctcgac
actgagctaccgcgaccttactaccccgatgtcaggtaccacacgcacaaccagttcccg
caggagcccctggccatctttgaggatcctcgactctaccagcggattgatccggacacc
ctcttttacgtcttctactacaaacagggaacatatcaacaataccttgctgccaaggcc
ctgaaagatcaaagttggaggtttcacaagcagtaccagacgtggttccagcgacacgag
gagccgaaatcgatcacggaggaattcgaacaaggaacctatcgtttctttgactacgag
agcacatggatgaatcgcaggaaggccgacttcaagttcacttacaagttccttgaggac
gaagtataa
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