Staphylothermus marinus: Smar_0717
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Entry
Smar_0717 CDS
T00485
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
smr
Staphylothermus marinus
Brite
KEGG Orthology (KO) [BR:
smr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smr03019
]
Smar_0717
03009 Ribosome biogenesis [BR:
smr03009
]
Smar_0717
04131 Membrane trafficking [BR:
smr04131
]
Smar_0717
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smr04147
]
Smar_0717
Messenger RNA biogenesis [BR:
smr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Smar_0717
Ribosome biogenesis [BR:
smr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Smar_0717
Membrane trafficking [BR:
smr04131
]
SNARE
SNARE associated proteins
Others
Smar_0717
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Smar_0717
Exosome [BR:
smr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Smar_0717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_5
TIP49
AAA_22
AAA_2
AAA_14
AAA_33
AAA_28
IstB_IS21
AAA_18
nSTAND3
RNA_helicase
AAA_24
Mg_chelatase
Sigma54_activat
Parvo_NS1
DUF815
ATPase
ATPase_2
Vps4_C
AAA_7
AAA_17
TsaE
AAA_3
PhoH
Zeta_toxin
AAA_19
NB-ARC
DUF5906
AAA_25
SLFN-g3_helicase
Bac_DnaA
Zot
Motif
Other DBs
NCBI-ProteinID:
ABN69820
UniProt:
A3DMG0
LinkDB
All DBs
Position
723740..725956
Genome browser
AA seq
738 aa
AA seq
DB search
MSLSTPSNKSGKIKITLRVLESEPRDVGKGIARVDPAIMERYGIINGDILLVEGRKKTVV
RAVEGYEKDRGLGIIRLDKFSRQNAGVKIGDKVIVEKLDENEVQKAITVKLAPTKYYAPI
DPGTIGYIKNRLLNRPVLEEDLVVIQILGQTIPFKVILTKPKGPVIIKRNTNIIVLERPM
DHAVPRVTYEDIGGMKHIVQRVRELVELPLRHPELFRRLGIEPPKGILLYGPPGTGKTLL
AKAVANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKNAPAIIFIDEIDAIAPKRD
EVMGEVERRVVAQLLALMDGLESRGDVIVIAATNRPNALDPALRRPGRFDREIEVPLPDK
QGRLEILQIHTRGMPLANDVDLNKLAEITHGYTGADIAALVKEAALHALRRYMPEIDLES
ETIPVEVLEKMEVRMEDFLAAYKEIVPSGLREIYVEVPEVSWDDIGGLEDVKQELRRAVE
WPMKYPEVFKRLGIKPPRGILLYGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE
SEKAIREIFRKARLYAPAVIFFDEIDAIAPARGYAFDSRVTERIVSQLLTEMDGINRLDN
VVVIAATNRPDILDPALLRPGRFDKLIYVPPPDLNGRIEILKIHTRNMPLADDVDLYEIA
RLTEGYSGADLEALVREAAMRALKENIEINKVYMRHFLEAMNEVRPSITQDIVKLYEEWG
RKARQRLPREYLKPAMYT
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgtcgacaccaagcaataaatccggtaagataaaaattacactaagagttctt
gaaagcgaaccaagagatgtaggtaagggaatagcaagagttgatccagcgattatggag
agatacggaataataaatggcgatattctacttgttgaaggaaggaagaaaaccgttgtt
agagctgttgagggatacgagaaagatcgtggattaggcattatcagactagacaaattc
tctaggcaaaacgcaggtgtaaagataggggataaagtaatagttgagaaattagatgag
aacgaagtccagaaagcaataacagttaaattagcccccacaaaatactatgcaccaata
gatccaggcacgattgggtatattaaaaatagactactaaaccgtcccgtattagaagaa
gacctagtagttattcaaatacttggacaaacaatacccttcaaagtaatcttgacaaaa
cctaagggaccagtcataataaagaggaacacaaacataatagtattagagagaccaatg
gatcacgcagttcctagagtaacatatgaagatattggaggcatgaaacacattgtacaa
cgagtaagagaactagtagagctaccgctaagacatccagagctgtttagaagactcgga
atagaaccacccaaggggatcctattatatggtcctccaggtactggtaagacattatta
gctaaagctgtcgctaacgaagcagaagcatatttcatagcaatcaacggacctgaaata
ataagtaagttctatggtgaatcagagcagaggcttagagaaatatttgagcaagcaaaa
aagaatgctccagcaataatattcatagacgaaatagacgctatagctcctaaaagagac
gaagtcatgggagaagttgaaaggagagttgtagcacagcttctagcattaatggacggg
cttgaaagccgtggagacgtaatagtaattgccgcaacaaataggcctaacgcattagac
ccagcactccgtagacctggaagatttgatagagaaatagaggttccactaccagataag
cagggaagactggaaattctacaaatacatacacgtggaatgcctttagcaaatgatgtt
gacctaaataaattagcagaaataacacatggatacacgggagcagacattgctgcacta
gtcaaagaagcagctttacacgcgcttagaagatatatgcctgaaatagatttggaaagt
gaaactatacctgtagaagtcctcgagaaaatggaggttagaatggaggatttcctagca
gcatataaggaaatagtgcctagtggtctacgtgaaatatatgttgaagtcccagaggtt
tcatgggacgatattggtgggttagaagatgttaaacaagagcttagaagagctgttgaa
tggcctatgaagtatccagaagtatttaagagacttggaataaaacctcccagaggaatc
ctattatatggtcctccaggtactggtaagacattattagctaaagctgttgctactgag
agtggtgcaaacttcatagcagtaagaggaccagaaatactaagcaaatgggtaggagaa
tcagaaaaagcgatcagggagatctttagaaaagcgagactctacgctccagcagtgatt
ttcttcgacgaaatagacgctatagctccagctagaggatatgctttcgattcaagagta
actgagagaatagttagccagttattaacggaaatggatggaatcaatagattggacaac
gtagtagttatagctgcaactaatagaccagacatactcgatccagcactgcttagaccg
ggaagatttgataagctaatatacgtgcctccaccagatctaaatggtagaatagagatc
ttaaagattcatacacgtaatatgccgttagctgatgacgtagacttatatgaaattgcc
agattaactgaaggatatagtggtgctgacttagaagcattagttagagaagccgctatg
agagcattaaaggagaacatagagattaacaaagtatatatgaggcatttcctagaagca
atgaatgaagtaagaccctcgatcacccaagacatagtgaagctatacgaggaatggggg
agaaaggcgaggcagagattaccaagagaatatttaaagcccgcaatgtatacataa
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integrated database retrieval system
